Systems composed of many components which interact with each other and lead to unpredictable global behaviour, are considered as complex systems. In a biological context, complex systems represent living systems composed of a large number of interacting elements. In order to study these systems, a precise mathematical modelling was typically used in this context. However, this modelling has limitations in the structural understanding and the behavioural study. In this sense, formal computational modelling is an approach that allows to model and to simulate dynamical properties of these particular systems. In this paper, we use Hybrid Functional Petri Net (HFPN), a Petri net extension dedicated to study and verify biopathways, to model and study the Methionine metabolic pathway. Methionine and its derivatives play significant roles in human bodies. We propose a set of simulations for the purpose of studying and analysing the Methionine pathway’s behaviour. Our simulation results have sh... [more]

The naphtha recovery unit (NRU) is an integral part of the processes used in the oil sands industry for bitumen extraction. The principle role of the NRU is to recover naphtha from the tailings for reuse in this process. This process is energy-intensive, and environmental guidelines for naphtha recovery must be met. Steady-state models for the NRU system are developed in this paper using two different approaches. The first approach is a statistical, data-based modelling approach where linear regression models have been developed using Minitab® from plant data collected during a performance test. The second approach involves the development of a first-principles model in Aspen Plus® based on the NRU process flow diagram. A novel refinement to this latter model, called “withdraw and remix„, is proposed based on comparing actual plant data to model predictions around the two units used to separate water and naphtha. The models developed in this paper suggest some interesting ideas for the... [more]

Traditionally used herbal medicines are deep in the consciousness of patients for the treatment of only minor diseases by self-medication. However, manufacturers of herbal medicinal products suffer from major problems such as increasing market pressure by e.g., the food supplement sector, increasing regulations, and costs of production. Moreover, due to more stringent regulation and approval processes, innovation is hardly observed, and the methods used in process development are outdated. Therefore, this study aims to provide an approach based on modern process engineering concepts and including predictive process modelling and simulation for the extraction of traditional herbal medicines as complex extracts. The commonly used solvent-based percolation is critically assessed and compared to the so-called pressurized hot water extraction (PHWE) as a new possible alternative to replace organic solvents. In the study a systematic process design for the extraction of hawthorn (Crataegus m... [more]

A low-temperature drying with fluidized bed dryer (FBD) for wheat germ (WG) stabilization could prevent the loss of nutrients during processing. However, both evaporation and condensation behaviors occurred in sequence during FBD drying of WG. The objective of this study was to develop a theoretical thin-layer model coupling with the macro-heat transfer model and the bubble model for simulating both the dehydration and condensation behaviors of WG during low-temperature drying in the FBD. The experimental data were also collected for the model modification. Changes in the moisture content of WG, the air temperature of FBD chamber, and the temperature of WG during drying with different heating approaches were significantly different. The thermal input of WG drying with short heating time approach was one-third of that of WG drying with a traditional heating approach. The mathematical model developed in this study could predict the changes of the moisture content of WG and provide a good... [more]

Developing and improving mechanism-oriented computational models to better explain biological phenomena is a dynamic and expanding frontier. As the complexity of targeted phenomena has increased, so too has the diversity in methods and terminologies, often at the expense of clarity, which can make reproduction challenging, even problematic. To encourage improved semantic and methodological clarity, we describe the spectrum of Mechanism-oriented Models being used to develop explanations of biological phenomena. We cluster explanations of phenomena into three broad groups. We then expand them into seven workflow-related model types having distinguishable features. We name each type and illustrate with examples drawn from the literature. These model types may contribute to the foundation of an ontology of mechanism-based biomedical simulation research. We show that the different model types manifest and exert their scientific usefulness by enhancing and extending different forms and degre... [more]

The problem of scheduling multiproduct and multipurpose batch processes has been studied for more than 30 years using math programming and heuristics. In most formulations, the manufacturing recipes are represented by simplified models using state task network (STN) or resource task network (RTN), transfers of materials are assumed to be instantaneous, constraints due to shared utilities are often ignored, and scheduling horizons are kept small due to the limits on the problem size that can be handled by the solvers. These limitations often result in schedules that are not actionable. A simulation model, on the other hand, can represent a manufacturing recipe to the smallest level of detail. In addition, a simulator can provide a variety of built-in capabilities that model the assignment decisions, coordination logic and plant operation rules. The simulation based schedules are more realistic, verifiable, easy to adapt for changing plant conditions and can be generated in a short perio... [more]

In this study, the solvent based extraction of artemisinin from Artemisia annua L. using acetone in percolation mode is compared to the method of pressurized hot water extraction. Both techniques are simulated by a physico-chemical process model. The model as well as the model parameter determination, including the thermal degradation of artemisinin are shown and discussed. For the conventional extraction, a solvent screening is performed considering various organic solvents. A temperature screening is presented for the systematic design of the pressurized hot water extraction. The best temperature with regards to thermal decomposition and high productivity was found to be 80 °C. Both, conventional percolation and Pressurized Hot Water Extraction (PHWE) are suitable for the extraction of artemisinin. The extraction curves show a high conformity with the simulation results.

Ecological mechanisms influence relationships among microbial communities, which in turn impact biogeochemistry. In particular, microbial communities are assembled by deterministic (e.g., selection) and stochastic (e.g., dispersal) processes, and the relative balance of these two process types is hypothesized to alter the influence of microbial communities over biogeochemical function. We used an ecological simulation model to evaluate this hypothesis, defining biogeochemical function generically to represent any biogeochemical reaction of interest. We assembled receiving communities under different levels of dispersal from a source community that was assembled purely by selection. The dispersal scenarios ranged from no dispersal (i.e., selection-only) to dispersal rates high enough to overwhelm selection (i.e., homogenizing dispersal). We used an aggregate measure of community fitness to infer a given community’s biogeochemical function relative to other communities. We also used ecol... [more]

We present a new two-level rolling horizon optimization framework applied to a zero-emissions coal-fueled solid-oxide fuel cell power plant with compressed air energy storage for peaking applications. Simulations are performed where the scaled hourly demand for the year 2014 from the Ontario, Canada market is met as closely as possible. It was found that the proposed two-level strategy, by slowly adjusting the SOFC stack power upstream of the storage section, can improve load-following performance by 86% compared to the single-level optimization method proposed previously. A performance analysis indicates that the proposed approach uses the available storage volume to almost its maximum potential, with little improvement possible without changing the system itself. Further improvement to load-following is possible by increasing storage volumes, but with diminishing returns. Using an economically-focused objective function can improve annual revenue generation by as much as 6.5%, but no... [more]

In this work, a distillation system is designed to purify dimethyl ether (DME) from its reaction by-products in the conversion of flare gas into a useful energy product. The distillation equipment has a size constraint for easy transportation, making process intensification the best strategy to efficiently separate the mixture. The process intensification distillation techniques explored include the dividing wall column (DWC) and a novel semicontinuous dividing wall column (S-DWC). The DWC and the S-DWC both purify DME to fuel grade purity along with producing high purity waste streams. An economic comparison is made between the two systems. The DWC is a cheaper method of producing DME however the purity of methanol, a reaction intermediate, is not as high as the S-DWC. Overall, this research shows that it is possible to purify DME and its reaction by-products in a 40-foot distillation column at a cost that is competitive with Diesel.

In this study, a dynamic and two-dimensional model for a steam methane reforming process integrated with nuclear heat production is developed. The model is based on first principles and considers the conservation of mass, momentum and energy within the system. The model is multi-scale, considering both bulk gas effects as well as spatial differences within the catalyst particles. Very few model parameters need to be fit based on the design specifications reported in the literature. The resulting model fits the reported design conditions of two separate pilot-scale studies (ranging from 0.4 to 10 MW heat transfer duty). A sensitivity analysis indicated that disturbances in the helium feed conditions significantly affect the system, but the overall system performance only changes slightly even for the large changes in the value of the most uncertain parameters.

This study presents the design and analysis of a new integrated direct steam generation (DSG) concentrated solar power (CSP) plant with a decalin/naphthalene thermochemical storage system. Model simulations were performed in accordance to historical hourly solar radiation data over a year, using a combination of Aspen Plus v10, MATLAB 2016b, and Microsoft Excel VBA. It was found that the proposed plant feasibly stored and discharged energy, based on the solar radiation and chemical storage availability, to maintain base-load power productions (250 MW or 120 MW) with an overall efficiency of 14.6%. The effectiveness of the designed storage system was found to be comparable to a molten salt storage system which is currently used in existing CSP plants. The proposed integrated DSG CSP plant with a decalin/naphthalene thermochemical storage system shows promise for being an alternative to existing CSP plants.

This study presents the design and analysis of a new integrated direct steam generation (DSG) concentrated solar power (CSP) plant with a decalin/naphthalene thermochemical storage system. Model simulations were performed in accordance to historical hourly solar radiation data over a year, using a combination of Aspen Plus v10, MATLAB 2016b, and Microsoft Excel VBA. It was found that the proposed plant feasibly stored and discharged energy, based on the solar radiation and chemical storage availability, to maintain base-load power productions (250 MW or 120 MW) with an overall efficiency of 14.6%. The effectiveness of the designed storage system was found to be comparable to a molten salt storage system which is currently used in existing CSP plants. The proposed integrated DSG CSP plant with a decalin/naphthalene thermochemical storage system shows promise for being an alternative to existing CSP plants.

In this paper, several new processes are proposed which co-generate electricity and liquid fuels (such as diesel, gasoline, or dimethyl ether) from biomass, natural gas and heat from a high temperature gas-cooled reactor. This carbonless heat provides the required energy to drive an endothermic steam methane reforming process, which yields H2-rich syngas (H2/CO>6) with lower greenhouse gas emissions than traditional steam methane reforming processes. Since downstream Fischer-Tropsch, methanol, or dimethyl ether synthesis processes require an H2/CO ratio of around 2, biomass gasification is integrated into the process. Biomass-derived syngas is sufficiently H2-lean such that blending it with the steam methane reforming derived syngas yields a syngas of the appropriate H2/CO ratio of around 2. In a prior work, we also demonstrated that integrating carbonless heat with combined steam and CO2 reforming of methane is a promising option to produce a syngas with proper H2/CO ratio for Fischer... [more]