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Records with Subject: Biosystems
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Ultrasound-Assisted Extraction of Pectin from Malus domestica ‘Fălticeni’ Apple Pomace
Florina Dranca, Mircea Oroian
September 30, 2019 (v1)
Subject: Biosystems
Keywords: apple pomace, Malus domestica ‘Fălticeni’, Optimization, pectin, ultrasound
The use of an ultrasonic treatment for the extraction of pectin from Malus domestica ‘Fălticeni’ apple pomace, its effects on extraction yield and galacturonic acid content, and degree of esterification of the extracted pectin were investigated. The optimization of the extraction process showed that the highest yield of 9.183% pectin, with a 98.127 g/100 g galacturonic acid content and 83.202% degree of esterification, was obtained at 100% amplitude, pH of 1.8, SLR of 1:10 g/mL, and 30 min. The pectin obtained in optimal extraction conditions was compared to commercial citrus and apple pectin in terms of chemical composition (determined by FT-IR), thermal behaviour (analyzed by differential scanning calorimetry), rheological properties, and morphological structure (analyzed by scanning electron microscopy). By comparison to commercial citrus and apple pectin samples, the FT-IR analysis of pectin extracted by ultrasound treatment confirmed the high degree of esterification and showed si... [more]
Optimization of Microwave-Assisted Extraction of Total Phenolic and Total Flavonoid Contents from Fruits of Docynia indica (Wall.) Decne. Using Response Surface Methodology
Xuan Duy Le, Manh Cuong Nguyen, Dinh Hoang Vu, Minh Quan Pham, Quoc Long Pham, Quang Tung Nguyen, Tuan Anh Nguyen, Van Thinh Pham, Long Giang Bach, Tuong Van Nguyen, Quoc Toan Tran
September 30, 2019 (v1)
Subject: Biosystems
Keywords: Docynia indica, microwave-assisted extraction, response surface methodology, total phenolic content and total flavonoid content
Docynia indica (D. indica) shows various useful biological activities, such as antioxidant, anti-inflammatory, antibacterial effects, and positive benefits for human health. Such biological activities relate to the main phytochemicals of D. indica including phenolic and flavonoid. However, isolation for phenolic and flavonoid by popular methods such as hot extraction, soxhlet extraction, and ultrasonic extraction have been relatively ineffective. Therefore, in this study, microwave-assisted extraction (MAE) was used for the extraction of total phenolic and total flavonoid from D. indica. The optimization experiments were conducted based on response surface methodology (RMS) according to a central composite design with four independent variables: extraction time (min), ethanol concentration (%, v/v), microwave power (W), and pH of the solvent. Three dependent variables were total phenolic content (TPC), total flavonoid content (TFC), and yield. The optimal conditions for the extraction... [more]
The Effect of Extraction Methods on Preliminary Structural Properties and Antioxidant Activities of Polysaccharides from Lactarius vividus
Zhou Xu, Shiling Feng, Jipeng Qu, Ming Yuan, Ruiwu Yang, Lijun Zhou, Tao Chen, Chunbang Ding
September 30, 2019 (v1)
Subject: Biosystems
Keywords: antioxidant activities, extraction methods, Lactarius vividus, polysaccharides, preliminary structure properties
Four polysaccharides (LVP-u, LVP-m, LVP-e, and LVP-h) were extracted from the fruiting bodies of Lactarius vividus by an ultrasonic-assisted extraction method, microwave-assisted extraction method, enzyme-assisted extraction method, and hot water extraction method, respectively. Then, the effect of extraction methods on yields, preliminary structural properties, and antioxidant activities was systematically investigated using the weighing method, chemical composition analysis, high-performance gel permeation chromatography (HPGPC), high-performance liquid chromatography (HPLC), Fourier-transform infrared spectroscopy (FT-IR), scanning electron microscope (SEM), radical scavenging, and metal ion chelating assays. Results demonstrated that the four L. vividus polysaccharides (LVPs) were all combined with protein, and the yield of LVP-u was higher than others. Molecular weight distribution, monosaccharide and amino acid compositions, and microstructures among the four LVPs were significan... [more]
Recombinant Proteins for Industrial versus Pharmaceutical Purposes: A Review of Process and Pricing
John Puetz, Florian M. Wurm
September 30, 2019 (v1)
Subject: Biosystems
Keywords: drug preparation, manufactured materials, price, recombinant proteins
Recombinant proteins have been produced for over 30 years. Applications range from enzymes used in laundry detergents to antigen-detecting antibodies in cancer therapy. Despite similarities in manufacturing, drastic differences in retail pricing between recombinant proteins used for industrial (non-medical) versus pharmaceutical purposes exist. Industrial proteins often have a retail price in the tens of dollars per kilogram while recombinant proteins for medical use may cost billions of dollars per kilogram. This manuscript will briefly review manufacturing techniques and contrast the differences between industrial versus pharmaceutical production. Maximizing manufacturing technologies to reduce cost-of-goods (CoG) is desirable. However, the major reason for the very high pricing of pharma protein products does not reflect CoG, but the financial obligations of clinical trials, research and development, patent constraints, marketing, and return on investment.
Choline-Based Ionic Liquids as Media for the Growth of Saccharomyces cerevisiae
Magaret Sivapragasam, Cecilia Devi Wilfred, Joshua Raj Jaganathan, Sooridarsan Krishnan, Wan Azlina Wan Ab Wan Karim Ghani
September 23, 2019 (v1)
Subject: Biosystems
Keywords: biotoxicity, choline, ionic liquids, Saccharomyces cerevisiae
Ionic liquids (ILs) have garnered great attention as alternative solvents in many biological reactions and applications. However, its unknown toxicity is in line with the challenges to use it for biological applications. In this study, three choline based Ionic Liquids—choline saccharinate (CS), choline dihydrogen phosphate (CDHP), and choline tryptophanate (CT) were assessed for their suitability on the growth of Saccharomyces cerevisiae. The ILs were incorporated into the growth media of S. cerevisiae (defined as synthetic media) to access its potential as a substitute to conventional media. The compatibility of the synthetic media was evaluated based on the toxicity (EC50), growth curve, and glucose profile. The results showed that the incorporation of CDHP and CS did promote the growth of S. cerevisiae with a rapid glucose consumption rate. The growth of S. cerevisiae with the media composition of yeast extract, peptone, and CS showed improvement of 13%. We believe that these obser... [more]
Sustainable Green Procedure for Extraction of Hesperidin from Selected Croatian Mandarin Peels
Stela Jokić, Silvija Šafranko, Martina Jakovljević, Ana-Marija Cikoš, Nikolina Kajić, Filip Kolarević, Jurislav Babić, Maja Molnar
September 23, 2019 (v1)
Subject: Biosystems
Keywords: by-product, deep eutectic solvents, hesperidin, mandarin peel, Optimization
The peels of Citrus reticulata Blanco mandarin cultivars of different Croatian varieties (Zorica rana, Chahara, Okitsu, Kuno) were extracted using 15 different choline chloride-based deep eutectic solvents (DESs) at 50 °C for 30 min and with 20% water addition. The extracts were analyzed by high performance liquid chromatography with diode array detection (HPLC-DAD) to determine the most suitable DES for the extraction of hesperidin in the samples. The screening results indicated that choline chloride: acetamide (1:2) provided the most efficient hesperidin extraction (112.14 mg/g of plant), while choline chloride:citric acid (1:1) solvent showed the lowest hesperidin yield (1.44 mg/g of plant). The Box−Behnken design was employed to optimize extraction parameters for each variety of mandarin peel, including extraction time, temperature and water content on hesperidin extraction. The results indicated that hesperidin content in mandarin peels was completely variety-dependent. Being a no... [more]
Optimization of Total Anthocyanin Content, Stability and Antioxidant Evaluation of the Anthocyanin Extract from Vietnamese Carissa Carandas L. Fruits
Xuan Tien Le, Minh Thuan Huynh, Tri Nhut Pham, Van Thai Than, Tran Quoc Toan, Long Giang Bach, Nguyen Quang Trung
September 23, 2019 (v1)
Subject: Biosystems
Keywords: anthocyanin, antioxidant properties, Carissa carandas L., extract conditions, stability
In this study, the extraction of anthocyanin colorant from karanda fruit (Carissa carandas L.) was carried out and optimized with multiple single factor assays. Selected conditions for yield maximization consisted of ripen fruits with black-purple color, material size of thin slices (1.0−1.5 mm), solvent of EtOH 50%, material/ solvent ratio of 1:3, temperature of 50 °C, extraction time of 45 min, and two extraction cycles. The anthocyanin content in the extract was 277.2 mg/L, which is equivalent to 9.33 mg anthocyanin per gram of dry material. Aqueous solutions of the extract and dried extracts from Carissa carandas fruit were evaluated for stability at two temperature conditions, namely room temperature (30 ± 2 °C) and 45 °C. The temperature exerted great impact on color change, anthocyanin content and the degree of polymerization of anthocyanin. Aqueous solutions of extract with citric acid (3.0−5.0 g/L) were generally more color stable and less anthocyanin degradable than those wit... [more]
Lipase Production by Solid-State Cultivation of Thermomyces Lanuginosus on By-Products from Cold-Pressing Oil Production
Marina Tišma, Toma Tadić, Sandra Budžaki, Marta Ostojčić, Anita Šalić, Bruno Zelić, Nghiep Nam Tran, Yung Ngothai, Volker Hessel
September 23, 2019 (v1)
Subject: Biosystems
Keywords: flax oil cake, hemp oil cake, hull-less pumpkin oil cake, lipase, solid-state fermentation, Thermomyces lanuginosus
This study shows that by-products obtained after cold-pressing oil production (flex oil cake, hemp oil cake, hull-less pumpkin oil cake) could be used as substrates for the sustainable and cost-effective production of lipase when cultivating Thermomyces lanuginosus under solid-state conditions (T = 45 °C, t = 9 days). Lipase showed optimum activity at T = 40 °C. The produced lipase extract was purified 17.03-folds with a recovery of 1% after gel chromatography. Three different batch experiments were performed in order to test the possibility of using the lipase in biodiesel production. Experiments were performed with a commercial, unpurified enzyme, and partially purified lipase with sunflower oil and methanol as substrates in a batch reactor at 40 °C. During the experiments, the operational stability of the enzyme was studied. The obtained results clearly showed that produced crude and purified lipase can be used for biodiesel production, but the process needs some additional optimiza... [more]
Separation of Protein-Binding Anthraquinones from Semen Cassiae Using Two-Stage Foam Fractionation
Linlin Ding, Yanyan Wang, Chuanjun Yue, Zeying Wu, Ye Sun, Min Wang, Rui Li
September 23, 2019 (v1)
Subject: Biosystems
Keywords: anthraquinones, foam fractionation, interaction, proteins, Semen Cassiae
Anthraquinones are compounds of high medicinal value in many plants. Based on their good protein binding affinity, foam fractionation was attempted to separate them using proteins in the aqueous extract of Semen Cassiae as collectors. Firstly, the interaction between anthraquinones and Semen Cassiae proteins has been analyzed by the Stem−Volmer equation with physcion as a standard. The results show that physcion had good interaction with the proteins via hydrophobic forces. More importantly, the proteins effectively assisted the foam fractionation of several anthraquinones including aurantio-obtusifolin, aloe-emodin, rhein, emodin, chrysophanol, and physcion. On this basis, a two-stage foam fractionation technology was developed for process intensification using a foam fractionation with vertical sieve trays (VSTs). VSTs, initial feed concentration of total anthraquinones, temperature, volumetric air flow rate and pore diameter of gas distributor had significant effects on enrichment r... [more]
Extraction Process, Identification of Fatty Acids, Tocopherols, Sterols and Phenolic Constituents, and Antioxidant Evaluation of Seed Oils from Five Fabaceae Species
Lan Phuong Doan, Thi Thuy Nguyen, Minh Quan Pham, Quoc Toan Tran, Quoc Long Pham, Dinh Quang Tran, Van Thai Than, Long Giang Bach
September 23, 2019 (v1)
Subject: Biosystems
Keywords: antioxidant activity, Fabaceae seed oils, fatty acids, phenolic, sterols, tocopherols
The present study aimed to extract seed oils and characterize the chemical composition, including fatty acid profiles, tocopherols, sterols, and total phenolics of oils and extracts from five Fabaceae seeds: Glycine soja, Vigna angularis, Phaseolus lunatus, Phaseolus vulgarisand, and Phaseolus coccineus. The composition and content of all substance layers in total lipids of the extracted seed oils from five Fabaceae species contain: polar lipid (PL), sterol (ST), diacylglycerol (DG), triacylglycerol (TG), free fatty acid (FFA), and hydrocarbon and wax (HC + W). Antioxidant activity determined by the 2,2-diphenyl-1-picrylhydrazyl (DPPH) method was also estimated. Among these examined samples, Phaseolus vulgarisand and Phaseolus coccineus seed oils showed high content of α-linolenic acid (59.39% and 49.38%, respectively). Linoleic acid was abundantly found in Vigna angularis (49.01%). Ferunic and caffeic acid, γ-tocopherol, and β-sistosterol were the main ingredients present in the speci... [more]
Do Bioreactor Designs with More Efficient Oxygen Supply to Ovarian Cortical Tissue Fragments Enhance Follicle Viability and Growth In Vitro?
Gerardo Catapano, Gionata Fragomeni, Giuseppe Falvo D’Urso Labate, Luigi De Napoli, Vincenza Barbato, Maddalena Di Nardo, Valentina Costanzo, Teresa Capriglione, Roberto Gualtieri, Riccardo Talevi
September 23, 2019 (v1)
Subject: Biosystems
Keywords: bioreactor, design, in vitro culture, ovarian tissue, oxygen, transport
Background: Autotransplantation of cryopreserved ovarian tissue is currently the main option to preserve fertility for cancer patients. To avoid cancer cell reintroduction at transplantation, a multi-step culture system has been proposed to obtain fully competent oocytes for in vitro fertilization. Current in vitro systems are limited by the low number and health of secondary follicles produced during the first step culture of ovarian tissue fragments. To overcome such limitations, bioreactor designs have been proposed to enhance oxygen supply to the tissue, with inconsistent results. This retrospective study investigates, on theoretical grounds, whether the lack of a rational design of the proposed bioreactors prevented the full exploitation of follicle growth potential. Methods: Models describing oxygen transport in bioreactors and tissue were developed and used to predict oxygen availability inside ovarian tissue in the pertinent literature. Results: The proposed theoretical analysi... [more]
Capacity of Caulerpa lentillifera in the Removal of Fish Culture Effluent in a Recirculating Aquaculture System
B. V. A. S. Manori Bambaranda, Takuji W. Tsusaka, Anong Chirapart, Krishna R. Salin, Nophea Sasaki
September 23, 2019 (v1)
Subject: Biosystems
Keywords: bioremediation, effluent treatment, heavy metal, multiple regression, recirculating aquaculture system
Aquaculture is one of the fastest growing food producing industries in the world. Aquaculture effluent contains high concentrations of inorganic nutrients. Reduction of these inorganic nutrients in aquaculture effluent is crucial for fulfilling the effluent standards or reuse of aquaculture effluent. This study investigated the effective use of green macroalga Caulerpa lentillifera as a bioremediatory species for nutrient removal from aquaculture effluent by conducting an on-station experiment and measurements. The effluent of a fish culture unit was circulated through a macroalgal culture unit every four days for a total of 60 days, allowing 15 circulations. Concentrations of inorganic nutrients (NO2−-N, NO3−-N, NH3-N, and PO43−) were measured in the integrated system consisting of a fish unit, settling unit, macroalgal unit and extra tank for water circulation in triplicates. Multiple linear regression analysis revealed that the application of the bioremediation system led to a signi... [more]
Isolation Process and Compound Identification of Agarwood Essential Oils from Aquilaria crassna Cultivated at Three Different Locations in Vietnam
Dinh Thi Thu Thuy, Tran Thi Tuyen, Tran Thi Thu Thuy, Pham Thi Hong Minh, Quoc Toan Tran, Pham Quoc Long, Duy Chinh Nguyen, Long Giang Bach, Nguyen Quyet Chien
September 23, 2019 (v1)
Subject: Biosystems
Keywords: agarospirol, agarwood, Aquilaria crassna, dihydrokaranone, essential oils, neopetasane, β-agarofuran
Agarwood and agarwood essential oils are commodities with great commercial value. In Vietnam, the agarwood industry has been growing, with more than 10,000 ha of forest land reserved for the cultivation of Aquilaria crassna, an agarwood-producing tree. The aim of this study was to present a hydrodistillation process to recover agarwood essential oil and to compare chemical compositions of agarwood samples harvested from various locations in Vietnam. Three agarwood samples representing products from A. crassna trees cultivated in the provinces of Bac Giang and Khanh Hoa, and on the Phu Quoc island (Kien Giang province) of Vietnam were subjected to hydrodistillation, resulting in essential oil yields of 0.32%, 0.27%, and 0.25% (w/w), respectively. Using GC−MS analysis, a total of 44 volatile compounds were identified in the obtained oils. Most of the constituents were oxygenated sesquiterpenes and had been previously found in other agarwood oil samples. Notable compounds of other chemica... [more]
Curcumin Analogues with Aldose Reductase Inhibitory Activity: Synthesis, Biological Evaluation, and Molecular Docking
Dasharath Kondhare, Sushma Deshmukh, Harshad Lade
September 13, 2019 (v1)
Subject: Biosystems
Keywords: aldose reductase inhibitor, antidiabetic, Claisen–Schmidt condensation, curcumin analogues, molecular docking
Curcumin, a constituent of Curcuma longa, has shown numerous biological and pharmacological activities, including antidiabetic effects. Here, a novel series of curcumin analogues were synthesized and evaluated for in vitro inhibition of aldose reductase (AR), the first and rate-limiting enzyme of the polyol pathway, which plays a key role in the onset and progression of diabetic complications. Biological activity studies showed that all the curcuminoids exhibited moderate to good AR inhibitory (ARI) activities compared with that of the quercetin standard. Importantly, compounds 8d, 8h, 9c, 9e, and 10g demonstrated promising ARI activities, with the 50% inhibitory concentration (IC50) values of 5.73, 5.95, 5.11, 5.78, and 5.10 µM, respectively. Four other compounds exhibited IC50 values in the range of 6.04−6.18 µM. Methyl and methoxy derivatives showed a remarkable ARI potential compared with that of other substitutions on the aromatic ring. Molecular docking experiments demonstrated t... [more]
Natural Deep Eutectic Solvent-Assisted Pectin Extraction from Pomelo Peel Using Sonoreactor: Experimental Optimization Approach
Amal A. M. Elgharbawy, Adeeb Hayyan, Maan Hayyan, Mohamed E. S. Mirghani, Hamzah Mohd. Salleh, Shahidah Nusailah Rashid, Gek Cheng Ngoh, Shan Qin Liew, Mohd Roslan Mohd Nor, Mohd Yakub Zulkifli bin Mohd Yusoff, Yatimah Alias
September 13, 2019 (v1)
Subject: Biosystems
Keywords: Citrus grandis, definitive screening design, Extraction, natural deep eutectic solvent, pectin, pomelo
Background: Natural deep eutectic solvents (NADESs) can be used for extracting a wide range of biomaterials, such as pectin. This study introduces a new generation of natural solvents for pectin extraction which could replace the conventional solvents in the food industry. Methods: In this study, NADESs were used for pectin extraction from pomelo (Citrus grandis (L.) Osbeck) peels using a sonoreactor. Definitive screening design (DSD) was used to screen the influence of time, temperature, solid/liquid ratio, and NADES/water ratio on the pectin yield and degree of esterification (DE). Results: The primary screening revealed that the best choices for the extraction were choline chloride−malonic acid (ChCl-Mal) and choline chloride−glucose−water (ChCl:Glc:W). Both co-solvents yielded 94% pectin and 52% DE after optimization at 80 °C, with 60 min of sonication, pH < 3.0, and a NADES-to-water ratio of 1:4.5 (v/v). Morphological screening showed a smooth and compact surface of the pectin fro... [more]
Fabrication of Green Superhydrophobic/Superoleophilic Wood Flour for Efficient Oil Separation from Water
Xuefei Tan, Deli Zang, Haiqun Qi, Feng Liu, Guoliang Cao, Shih-Hsin Ho
September 13, 2019 (v1)
Subject: Biosystems
Keywords: oil adsorption, oil-water separation, superhydrophobic, superoleophilic, sustainable material, wood flour
The removal of oil from waste water is gaining increasing attention. In this study, a novel synthesis method of green superhydrophobic/superoleophilic wood flour is proposed using the deposition of nano−zinc oxide (nZnO) aggregated on the fiber surface and the subsequent hydrophobic modification of octadecanoic acid. The as-prepared wood flour displayed great superhydrophobicity and synchronous superoleophilicity properties with the water contact angle (WCA) of 156° and oil contact angle (OCA) of 0° for diesel oil. Furthermore, the as-prepared wood flour possessed an excellent stability, probably due to the strong adhesion of nZnO, which aggregates to the fiber surface of wood flour with the action of glutinous polystyrene. The maximum adsorption capacity of as-prepared wood flour was 20.81 g/g for engine oil, which showed that the as-prepared wood flour is a potential candidate as an efficient oil adsorbent in the field of water-oil separation. Moreover, it has good chemical steadines... [more]
Spatial Variations of Bacterial Communities of an Anaerobic Lagoon-Type Biodigester Fed with Dairy Manure
Marleny García-Lozano, Inty Omar Hernández-De Lira, David H. Huber, Nagamani Balagurusamy
September 5, 2019 (v1)
Subject: Biosystems
Keywords: anaerobic digestion, bacterial communities, biodigester, PICRUSt, spatial variations
Anaerobic digestion technology is being widely employed for sustainable management of organic wastes generated in animal farms, industries, etc. Nevertheless, biodigester microbiome is still considered a “black box” because it is regulated by different physico-chemical and operational factors. In this study, the bacterial diversity and composition in different sites of a full-scale lagoon type biodigester (23,000 m3) fed with dairy manure, viz., the influent, beginning, middle, final and effluent were analyzed. The biodigester registered a total of 1445 OTUs, which demonstrated the complex microbial ecosystem in it. Of them, only six OTUs were shared among all the different sampling points. The most abundant phyla belonged to Firmicutes, Proteobacteria, Latescibacteria and Thermotogae. The Simpson and Shannon index showed that the highest microbial diversity was observed in the beginning point of the biodigester, meanwhile, the lowest diversity was recorded in the middle. Based on the... [more]
Enhanced Anaerobic Mixed Culture Fermentation with Anion-Exchange Resin for Caproate Production
Jiangnan Yu, Jialin Liao, Zhenxing Huang, Peng Wu, Mingxing Zhao, Chunmei Liu, Wenquan Ruan
September 5, 2019 (v1)
Subject: Biosystems
Keywords: adsorption process, anaerobic mixed culture, caproate fermentation, enhanced performance
The bioproduction of caproate from organic waste by anaerobic mixed culture is a very attractive technology for upgrading low-grade biomass to a high-value resource. However, the caproate production process is markedly restricted by the feedback inhibition of caproate. In this study, four types of anion-exchange resin were investigated for their enhancing capability in caproate fermentation of anaerobic mixed culture. The strong base anion-exchange resin D201 showed the highest adsorption capacity (62 mg/g), selectivity (7.50), and desorption efficiency (88.2%) for caproate among the test resins. Subsequently, the optimal desorption temperature and NaOH concentration of eluent for D201 were determined. The adsorption and desorption efficiency of D201 remained stable during eight rounds of the adsorption−desorption cycle, indicating a satisfactory reusability of D201. Finally, performances of caproate fermentation with and without resin adsorption for carboxylate were evaluated. The res... [more]
Biological Pretreatment of Oil Palm Empty Fruit Bunch by Schizophyllum commune ENN1 without Washing and Nutrient Addition
Enis Natasha Noor Arbaain, Ezyana Kamal Bahrin, Mohamad Faizal Ibrahim, Yoshito Ando, Suraini Abd-Aziz
September 5, 2019 (v1)
Subject: Biosystems
Keywords: biological pretreatment, fermentable sugar, lignin, OPEFB, Schizophyllum commune
Washing and drying are common steps for oil palm empty fruit bunch (OPEFB) preparation prior to pretreatment. However, the mass balance of OPEFB preparation proved a major loss of OPEFB during the washing and drying steps. An indigenous fungus, Schizophyllum commune ENN1 was used for delignification of unwashed OPEFB in biological pretreatment without nutrient addition. S. commune ENN1 achieved a maximum lignin removal of 53.8% after 14 days of biological pretreatment of unwashed OPEFB. S. commune ENN1 was able to grow on unwashed OPEFB during biological pretreatment at 55% of moisture content and 5% of oil residue. The highest amount of reducing sugars obtained from OPEFB pretreated by S. commune ENN1 was 230.4 ± 0.19 mg/g with 54% of hydrolysis yield at 96 h. In comparison, the sugar yield of OPEFB pretreated by Phanerochaete chrysosporium was 101.2 ± 0.04 mg/g. This study showed that S. commune ENN1 was feasible to remove lignin of OPEFB through biological pretreatment for enzymatic... [more]
Theoretical Study of the Adsorption Process of Antimalarial Drugs into Acrylamide-Base Hydrogel Model Using DFT Methods: The First Approach to the Rational Design of a Controlled Drug Delivery System
Eliceo Cortes, Edgar Márquez, José R. Mora, Esneyder Puello, Norma Rangel, Aldemar De Moya, Jorge Trilleras
September 5, 2019 (v1)
Subject: Biosystems
Keywords: binding energy, computational modeling, drug-delivery system, hydrogel, hydrogen bond, Plasmodium falciparum
The interaction between three widely used antimalarial drugs chloroquine, primaquine and amodiaquine with acrylamide dimer and trimer as a hydrogel model, were studied by means of density functional theory calculation in both vacuum and water environments, using the functional wb97xd with 6-31++G(d,p) basis set and polarizable continuum model (C-PCM) of solvent. According to binding energy, around −3.15 to −11.91 kJ/mol, the interaction between antimalarial compounds and hydrogel model are exothermic in nature. The extent of interaction found is primaquine > amodiaquine > chloroquine. The natural bond orbital (NBO) calculation and application of second-order perturbation theory show strong charge transfer between the antimalarial and hydrogel model. In addition, the results suggest these interactions are polar in nature, where hydrogen bonds play a principal role in stabilization of the complex. Comparing with the gas-phase, the complexes in the water environment are also stable, with... [more]
Direct Observation of Growth Rate Dispersion in the Enzymatic Reactive Crystallization of Ampicillin
Matthew A. McDonald, Andreas S. Bommarius, Martha A. Grover, Ronald W. Rousseau
August 15, 2019 (v1)
Subject: Biosystems
Keywords: growth rate dispersion, penicillin G acylase, β-lactam antibiotics
Prediction and control of crystal size distributions, a prerequisite for production of consistent crystalline material in the pharmaceutical industry, requires knowledge of potential non-idealities of crystal growth. Ampicillin is one such medicine consumed in crystal form (ampicillin trihydrate). Typically it is assumed that all crystals of the same chemical and geometric type grow at the same rate, however a distribution of growth rates is often observed experimentally. In this study, ampicillin produced enzymatically is crystallized and a distribution of growth rates is observed as individual crystals are monitored by microscopy. Most studies of growth rate dispersion use complex flow apparatuses to maintain a constant supersaturation or imprecise measurements of size distributions to reconstruct growth rate dispersions. In this study, the controllable enzyme reaction enables the same information to be gathered from fewer, less complicated experiments. The growth rates of individual... [more]
Supercritical Fluid Extraction of Fat and Caffeine with Theobromine Retention in the Cocoa Shell
Fanny Adabel González-Alejo, Juan Barajas-Fernández, María de los Ángeles Olán-Acosta, Laura Mercedes Lagunes-Gálvez, Pedro García-Alamilla
August 15, 2019 (v1)
Subject: Biosystems
Keywords: caffeine, cocoa shell, extraction of fat, supercritical extraction, theobromine
The cocoa shell is a residue of low commercial value, which represents an alternative for obtaining substances of added value for the food and pharmaceutical industry. Substances of interest in the shell include fat and methylxanthines (theobromine and caffeine). In order to obtain the extraction behavior with supercritical CO2, a 23 factorial design was proposed with six central points, taking dynamic extraction into consideration. The following factors were involved: pressure (2,000−6,000 psi), temperature (313−333 K), and time (30−90 min). The obtained yield was between 3.66% and 15.30%. Fat was the substance that was extracted most effectively (94.73%). Caffeine demonstrated variability in the residue, with at least six treatments that exceeded a removal rate of more than 90%, while it was practically impossible to extract theobromine. The difference with regard to the extraction of theobromine may be attributed to its low solubility. Characterization using FT−IR showed the modific... [more]
Analysis of the Trends in Biochemical Research Using Latent Dirichlet Allocation (LDA)
Hee Jay Kang, Changhee Kim, Kyungtae Kang
August 15, 2019 (v1)
Subject: Biosystems
Keywords: biochemistry, LDA, research trend, topic modeling
Biochemistry has been broadly defined as “chemistry of molecules included or related to living systems”, but is becoming increasingly hard to be distinguished from other related fields. Targets of its studies evolve rapidly; some newly emerge, disappear, combine, or resurface themselves with a fresh viewpoint. Methodologies for biochemistry have been extremely diversified, thanks particularly to those adopted from molecular biology, synthetic chemistry, and biophysics. Therefore, this paper adopts topic modeling, a text mining technique, to identify the research topics in the field of biochemistry over the past twenty years and quantitatively analyze the changes in its trends. The results of the topic modeling analysis obtained through this study will provide a helpful tool for researchers, journal editors, publishers, and funding agencies to understand the connections among the diverse sub-fields in biochemical research and even see how the research topics branch out and integrate wit... [more]
Lipid Isolation Process and Study on Some Molecular Species of Polar Lipid Isolated from Seed of Madhuca ellitica
Doan Lan Phuong, Tran Quoc Toan, Ly P. T. Dang, Andrey B. Imbs, Pham Quoc Long, Tran Dinh Thang, Bertrand Matthaeus, Long Giang Bach, Le Minh Bui
August 14, 2019 (v1)
Subject: Biosystems
Keywords: lipid molecular species, Madhuca ellitica, phospholipids, seeds, sulfoquinovosyldiacylglycerol, tandem high-resolution mass spectrometry
This study attempted the lipid extraction process from the seeds of Madhuca ellitica, a lipid-rich plant, and conducted a lipidomic analysis on molecular species of the obtained product. Total lipids of the crude seeds were found to contain 11.2% of polar lipids. The major fatty acids (FAs) of the polar lipids were palmitic (16:0), stearic (18:0), oleic (18:1n-9), and linoleic (18:2n-6) acids, which amounted to 28.5, 12.5, 44.8, and 13.2% of total FAs, respectively. The content and chemical structures of individual molecular species of phosphatidylglycerol (PG), phosphatidylethanolamine (PE), phosphatidylcholine (PC), phosphatidylinositol (PI), phosphatidic acid (PA), and sulfoquinovosyldiacylglycerol (SQDG) were determined by HPLC with a tandem high-resolution mass spectrometry (HRMS). The major molecular species were 18:1/18:2 PE, 16:0/18:1 PC, 18:1/18:2 PC, 16:0/18:2 PG, 16:0/18:1 PG, 16:1/18:1 PI, 16:0/18:1 PI, 18:0/18:2 PI, 16:0/18:1 PA, 18:1/18:2 PA, 16:0/18:1 SQDG, and 18:0/18:1... [more]
The Impact of Erythrocytes Injury on Blood Flow in Bionic Arteriole with Stenosis Segment
Donghai Li, Guiling Li, Yuanyuan Chen, Jia Man, Qingyu Wu, Mingkui Zhang, Haosheng Chen, Yu Zhang
August 14, 2019 (v1)
Subject: Biosystems
Keywords: bionic microfluidic device, erythrocyte injury, flow pattern, thrombosis
Ventricular assist device (VAD) implantation is an effective treatment for patients with end-stage heart failure. However, patients who undergo long-term application of VADs experience a series of VAD-related adverse effects including pump thrombosis, which is induced by rotate impeller-caused blood cell injury and hemolysis. Blood cell trauma-related flow patterns are the key mechanism for understanding thrombus formation. In this study, we established a new method to evaluate the blood cell damage and investigate the real-time characteristics of blood flow patterns in vitro using rheometer and bionic microfluidic devices. The variation of plasma free hemoglobin (PFH) and lactic dehydrogenase (LDH) in the rheometer test showed that high shear stress was the main factor causing erythrocyte membrane injury, while the long-term exposure of high shear stress further aggravated this trauma. Following this rheometer test, the damaged erythrocytes were collected and injected into a bionic mi... [more]
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