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Records with Subject: Biosystems
440. LAPSE:2023.6373
Microbial Granule Technology—Prospects for Wastewater Treatment and Energy Production
February 23, 2023 (v1)
Subject: Biosystems
Keywords: aerobic granular sludge, algal-bacterial granules, anaerobic granular sludge, energy recovery, sewage sludge, waste to energy, wastewater treatment
Recent years have brought significant evolution and changes in wastewater treatment systems. New solutions are sought to improve treatment efficiency, reduce investment/operational costs, and comply with the principles of circular economy and zero waste. Microbial granules can serve as an alternative to conventional technologies. Indeed, there has been fast-growing interest in methods harnessing aerobic (AGS) and anaerobic (AnGS) granular sludge as well as microbial-bacterial granules (MBGS), as evidenced by the number of studies on the subject and commercial installations developed. The present paper identifies the strengths and weaknesses of wastewater treatment systems based on granular sludge (GS) and their potential for energy production, with a particular focus on establishing the R&D activities required for further advance of these technologies. In particular, the impact of granules on bioenergy conversion, including bio-oil recovery efficiency and biomethane/biohydrogen yields,... [more]
441. LAPSE:2023.6250
Denitrification in Microbial Fuel Cells Using Granular Activated Carbon as an Effective Biocathode
February 23, 2023 (v1)
Subject: Biosystems
Keywords: biocathode, denitrification, direct electron transfer, granular activated carbon, microbial fuel cells, stored charge transfer
Nitrate (NO3−-N) and nitrites (NO2−-N) are common pollutants in various water bodies causing serious threats not only to aquatic, but also to animals and human beings. In this study, we developed a strategy for efficiently reducing nitrates in microbial fuel cells (MFCs) powered by a granular activated carbon (GAC)-biocathode. GAC was developed by acclimatizing and enriching denitrifying bacteria under a redox potential (0.3 V) generated from MFCs. Thus, using the formed GAC-biocathode we continued to study their effect on denitrification with different cathode materials and circulation speeds in MFCs. The GAC-biocathode with its excellent capacitive property can actively reduce nitrate for over thirty days irrespective of the cathode material used. The stirring speed of GAC in the cathode showed a steady growth in potential generation from 0.25 V to 0.33 V. A rapid lag phase was observed when a new carbon cathode was used with enriched GAC. While a slow lag phase was seen when a stain... [more]
442. LAPSE:2023.6121
Microbial Fuel Cell Performance Boost through the Use of Graphene and Its Modifications—Review
February 23, 2023 (v1)
Subject: Biosystems
Keywords: alternative energy, electrochemistry, electrodes, graphene, micro-organisms, microbial fuel cells
The conversion of chemical energy contained in organic matter into electricity has become an object of interest for many scientists worldwide. This technology is used in microbial fuel cells (MFC). Apart from generating electrical energy, these cells can be used simultaneously for wastewater treatment. Although the technology is constantly being improved, currently functioning microbial fuel cells cannot provide appropriate output parameters to use on an industrial scale. One of the barriers is so-called extracellular electron transfer, which in turn depends on the electrode type used, its material, shape, and size. According to current literature, carbon, graphite, stainless steel, and ceramics are the most frequently used electrode materials. However, more and more often, scientists are turning to other, unusual materials, the production of which uses the newest technologies, and one of them is graphene. This material is modified in different ways and connected with other materials,... [more]
443. LAPSE:2023.6111
Effects of Pulsed Electric Fields and Ultrasound Processing on Proteins and Enzymes: A Review
February 23, 2023 (v1)
Subject: Biosystems
Keywords: food enzymes, food proteins, nonthermal processing, novel processing, pulsed electric field, ultrasonic, ultrasound processing
There is increasing demand among consumers for food products free of chemical preservatives, minimally processed and have fresh-like natural flavors. To meet these growing demands, the industries and researchers are finding alternative processing methods, which involve nonthermal methods to obtain a quality product that meets the consumer demands and adheres to the food safety protocols. In the past two decades’ various research groups have developed a wide range of nonthermal processing methods, of which few have shown potential in replacing the traditional thermal processing systems. Among all the methods, ultrasonication (US) and pulsed electric field (PEF) seem to be the most effective in attaining desirable food products. Several researchers have shown that these methods significantly affect various major and minor nutritional components present in food, including proteins and enzymes. In this review, we are going to discuss the effect of nonthermal methods on proteins, including... [more]
444. LAPSE:2023.6092
Effect of Drying on Nutritional Composition of Atlantic Sea Cucumber (Cucumaria frondosa) Viscera Derived from Newfoundland Fisheries
February 23, 2023 (v1)
Subject: Biosystems
Keywords: amino acids, Cucumaria frondosa, drying, eicosapentaenoic acid, marine by-products, omega-3 fatty acids
is the main sea cucumber species harvested from Newfoundland waters. During processing, the viscera of sea cucumber are usually discarded as waste. As a matter of fact, sea cucumber viscera are abundant in various nutrients and promising for valorization. In the present study, sea cucumber viscera were pretreated by air drying and freeze drying, and the nutritional compositions of the dried products were investigated, including proximate composition, lipid class, fatty acid profile, and amino acid composition. The dried viscera had similar levels of ash, lipids, and proteins compared to fresh viscera. Both air- and freeze-dried viscera had total fatty acid composition similar to fresh viscera, with high levels of omega-3 polyunsaturated fatty acids (PUFAs) (30−31%), especially eicosapentaenoic acid (27−28%), and low levels of omega-6 PUFAs (~1%). The dried samples were abundant in essential amino acids (46−51%). Compared to air-dried viscera, freeze-dried viscera contained a lower cont... [more]
445. LAPSE:2023.6084
Curcumin Reinforces MiR-29a Expression, Reducing Mesangial Fibrosis in a Model of Diabetic Fibrotic Kidney via Modulation of CB1R Signaling
February 23, 2023 (v1)
Subject: Biosystems
Keywords: cannabinoid receptor type 1, curcumin, mesangial fibrosis, microRNA-29a
Renal fibrosis is a hallmark event in the pathogenesis of diabetic nephropathy. Considerable evidence now supports that multiple intracellular signaling pathways are critically involved in renal fibrosis. Previously, our studies have shown that dysregulation of the MicroRNA 29a (miR-29a)- or cannabinoid type 1 receptor (CB1R)-mediated signaling cascade in renal glomeruli substantially contributes to diabetic renal fibrosis. The purpose of the current study was to explore whether curcumin, a natural polyphenolic compound with potential renoprotective activity, could modulate the miR-29a/CB1R signaling axis to attenuate renal fibrosis. In this study, rat renal mesangial cells cultured in high glucose (HG) and the diabetic db/db mice were used as an in vitro and in vivo model of diabetes, respectively. Our results showed that in rat renal mesangial cells, curcumin treatment substantially counteracted HG-induced changes in the expressions of miR-29a, CB1R, peroxisome proliferator-activated... [more]
446. LAPSE:2023.6083
Effect of Cryoconcentration Assisted by Centrifugation-Filtration on Bioactive Compounds and Microbiological Quality of Aqueous Maqui (Aristotelia chilensis (Mol.) Stuntz) and Calafate (Berberis microphylla G. Forst) Extracts Pretreated with High-Pressure
February 23, 2023 (v1)
Subject: Biosystems
Keywords: Aristotelia chilensis, Berberis microphylla, bioactive compounds, cryoconcentration, high-pressure homogenization, polyphenols
The objective of this study was to evaluate the effect of cryoconcentration assisted by centrifugation-filtration on the bioactive compounds and the microbiological quality of aqueous maqui (Aristotelia chilensis (Mol.) Stuntz) and calafate (Berberis microphylla G. Forst) extracts pretreated with high-pressure homogenization (HPH). Aqueous extracts were prepared from fresh fruits which were treated with HPH (predefined pressure and number of passes). The best pretreatment was determined by aerobic mesophilic, fungal, and yeast counts. Treated extracts were frozen at −30 °C in special tubes and centrifuged at 4000 rpm for 10 min to obtain the cryoconcentrated product. The optimal pretreatment conditions for HPH were 200 MPa and one pass in which the extracts exhibited no microorganism counts. Cryoconcentration by freezing and subsequent centrifugation-filtration in a single cycle showed high process efficiency (>95%) in both soluble solids and bioactive compounds (total polyphenols and... [more]
447. LAPSE:2023.6074
Enterococcal Species Associated with Slovak Raw Goat Milk, Their Safety and Susceptibility to Lantibiotics and Durancin ED26E/7
February 23, 2023 (v1)
Subject: Biosystems
Keywords: bacteriocins, enterococcal species, raw goat milk, safety, virulence factor
Goat milk has become a popular item of human consumption due to its originality. Enterococci are ubiquitous bacteria, and they can also be found in traditional dairy products. This study focuses on the safety of enterococci from Slovak raw goat milk and on their susceptibility to lantibiotic bacteriocins and durancin ED26E/7, which has not previously been studied. Biofilm formation ability in enterococci, virulence factor genes, enzyme production and antibiotic profile were investigated. Samples of raw goat milk (53) were collected from 283 goats in Slovakia. MALDI-TOF mass spectrometry identified three enterococcal species: Enterococcus faecium, E. hirae and E. mundtii, with dominant occurrence of the species E. faecium. Low-grade biofilm formation ability (0.1 ≤ A570 < 1.0) was found in four strains of E. faecium. Gelatinase, hyaluronidase, aggregation substance and enterococcal surface protein genes were absent in these enterococci. Gene efaAfm (adhesin) was detected in five E. f... [more]
448. LAPSE:2023.6071
Production of Phenyllactic Acid from Porphyra Residues by Lactic Acid Bacterial Fermentation
February 23, 2023 (v1)
Subject: Biosystems
Keywords: algae, cellulase, Fermentation, lactic acid bacteria, phenyllactic acid, Porphyra residues
The concept of algae biorefinery is attracting attention because of the abundant valuable compounds within algal biomass. Phenyllactic acid (PhLA), a broad-spectrum antimicrobial organic acid that can be produced by lactic acid bacteria (LAB), is considered a potential biopreservative. In this study, a cascading biorefinery approach was developed to harvest PhLA from Porphyra residues by LAB fermentation. LAB strains were cultivated in de Man, Rogosa and Sharpe (MRS) broth to screen their ability to produce PhLA. As the strains of Lactobacillus plantarum KP3 and L. plantarum KP4 produced higher concentrations of PhLA at 0.09 mg/mL, these two strains were employed for fermentation. After phycobiliprotein extraction, the Porphyra residues, ultrafiltration eluate, phenylalanine (Phe) and yeast extract with a volume of 20 mL were inoculated with LAB strain KP3 and fermented at 37 °C for 120 h. The PhLA content of the fermented broth was 1.86 mg. To optimize the biorefinery process, the ult... [more]
449. LAPSE:2023.6066
Simultaneous Removal of Trivalent Arsenic and Nitrate Using Microbial Fuel Cells
February 23, 2023 (v1)
Subject: Biosystems
Keywords: microbial community, microbial fuel cells, nitrogen, trivalent arsenic
A rectangular double chamber with trivalent arsenic as the electron donor of the biological anode was constructed by microbial fuel cells (MFC), and the feasibility of the MFC simultaneous degradation of trivalent arsenic and nitrate was studied. Experimental results show that the co-matrix-coupled MFC reactor oxidizes trivalent arsenic in an anode chamber and degrades nitrate in the cathode chamber. The removal rate of trivalent arsenic is about 63.35%, and the degradation rate of nitrate is about 55.95% during the complete and stable operation period. MFC can continuously output electric energy, and the maximum output voltage is 388 mV. We compared and analyzed the main functional microflora of biofilm microorganisms in an anode chamber. In the long-term arsenic-polluted environment, the activity of Acinetobacter, Pseudomonas bacteria with arsenic resistance, was improved. It is inferred that a fraction of trivalent arsenic was oxidized to pentavalent arsenic by electrode-attached mi... [more]
450. LAPSE:2023.6030
Emulsion Formation and Stabilizing Properties of Olive Oil Cake Crude Extracts
February 23, 2023 (v1)
Subject: Biosystems
Keywords: interfacial tension, oil-in-water emulsion, olive oil extraction by-product, polyphenol, protein, saponin
The surface-active and emulsifying properties of crude aqueous ethanolic extracts from untreated olive oil cake (OOC) were investigated. OOC extracts contained important concentrations of surface-active components including proteins, saponins and polyphenols (1.2−2.8%, 7.8−9.5% and 0.7−4.5% (w/w), respectively) and reduced the interfacial tension by up to 46% (14.0 ± 0.2 mN m−1) at the oil−water interface. The emulsifying ability of OOC extracts was not correlated, however, with their interfacial activity or surface-active composition. Eighty percent aqueous ethanol extract produced the most stable oil-in-water (O/W) emulsions by high-pressure homogenization. The emulsions had average volume mean droplet diameters of approximately 0.4 µm and negative ζ-potentials of about −45 mV, and were stable for up to 1 month of storage at 5, 25 and 50 °C. They were sensitive, however, to acidic pH conditions (<5) and NaCl addition (≥25 mM), indicating that the main stabilization mechanism is el... [more]
451. LAPSE:2023.6026
High Throughput Expression Screening of Arabinofuranosyltransferases from Mycobacteria
February 23, 2023 (v1)
Subject: Biosystems
Keywords: Arabinofuranosyltransferases, high-throughput protocol, membrane proteins, Mycobacteria, overexpression in E. coli, protein purification
Studies on membrane proteins can help to develop new drug targets and treatments for a variety of diseases. However, membrane proteins continue to be among the most challenging targets in structural biology. This uphill endeavor can be even harder for membrane proteins from Mycobacterium species, which are notoriously difficult to express in heterologous systems. Arabinofuranosyltransferases are involved in mycobacterial cell wall synthesis and thus potential targets for antituberculosis drugs. A set of 96 mycobacterial genes coding for Arabinofuranosyltransferases was selected, of which 17 were successfully expressed in E. coli and purified by metal-affinity chromatography. We herein present an efficient high-throughput strategy to screen in microplates a large number of targets from Mycobacteria and select the best conditions for large-scale protein production to pursue functional and structural studies. This methodology can be applied to other targets, is cost and time effective and... [more]
452. LAPSE:2023.6008
Performance of Single and Two-Stage Cross-Flow Ultrafiltration Membrane in Fractionation of Peptide from Microalgae Protein Hydrolysate (Nannochloropsis gaditana)
February 23, 2023 (v1)
Subject: Biosystems
Keywords: cross-flow ultrafiltration membrane, microalgae protein hydrolysate, peptide, peptide transmission, permeate flux
Cross-flow ultrafiltration (UF) membrane with two different configurations; single (10 kDa and 5 kDa) and two-stage (10/5 kDa) in fractionating microalgae protein hydrolysate (MPH) were studied to obtain a low molecular weight of peptide. The effect of flow rate, trans-membrane pressure (TMP), and pH in fractionating MPH were evaluated based on permeate flux and peptide transmission. The results showed that, for single UF membrane, optimum operating parameters were at a flow rate of 23 mL/min, TMP of 1.5 bar, and pH of 9, with permeate flux of 43.65 L/m2 h (10 kDa) and 55.42 L/m2 h (5 kDa) and peptide transmission of 58.20% (10 kDa) and 67.34% (5 kDa). Meanwhile, for two-stage (10/5 kDa) UF membrane, the best parameters were observed at a flow rate of 23 mL/min, TMP of 1.5 bar, and pH of 2, with permeate flux of 69.85 L/m2 h and peptide transmission of 79.13%. Fractionation of MPH with two-stage UF membrane was observed to be better at producing a low molecular weight of peptide compar... [more]
453. LAPSE:2023.6007
Combination Therapy Involving Lavandula angustifolia and Its Derivatives in Exhibiting Antimicrobial Properties and Combatting Antimicrobial Resistance: Current Challenges and Future Prospects
February 23, 2023 (v1)
Subject: Biosystems
Keywords: antimicrobial resistance, combination therapy, lavender essential oil, nanoencapsulation, synergy
Antimicrobial resistance (AMR) has been identified as one of the biggest health threats in the world. Current therapeutic options for common infections are markedly limited due to the emergence of multidrug resistant pathogens in the community and the hospitals. The role of different essential oils (EOs) and their derivatives in exhibiting antimicrobial properties has been widely elucidated with their respective mechanisms of action. Recently, there has been a heightened emphasis on lavender essential oil (LEO)’s antimicrobial properties and wound healing effects. However, to date, there has been no review published examining the antimicrobial benefits of lavender essential oil, specifically. Previous literature has shown that LEO and its constituents act synergistically with different antimicrobial agents to potentiate the antimicrobial activity. For the past decade, encapsulation of EOs with nanoparticles has been widely practiced due to increased antimicrobial effects and greater bi... [more]
454. LAPSE:2023.5994
Membrane Disruption Properties of Essential Oils—A Double-Edged Sword?
February 23, 2023 (v1)
Subject: Biosystems
Keywords: antimicrobial, biopesticides, cell membrane, encapsulation, essential oils, membrane permeability, polymeric nanoparticle
The emerging literature has suggested essential oils (EOs) as new possible weapons to fight antimicrobial resistance due to their inherent antimicrobial properties. However, the potential pharmaceutical use of EOs is confronted by several limitations, including being non-specific in terms of drug targeting, possessing a high cytotoxicity as well as posing a high risk for causing skin irritation. Furthermore, some EOs have been demonstrated to adversely affect the cellular lipid profiles and permeability of the cell membrane, which may result in undesirable outcomes for the cells. Nevertheless, owing to their naturally complex compositions, EOs still hold undiscovered potential to mitigate antimicrobial resistance, as an alternative to existing antibiotics. To address the issue of overuse in antibiotics for crops which have led to the growing threat of antimicrobial resistance globally, EOs have also been proposed as potential biopesticides. Since the perceived advantages of antimicrobi... [more]
455. LAPSE:2023.5971
Identification of Synbiotics Conducive to Probiotics Adherence to Intestinal Mucosa Using an In Vitro Caco-2 and HT29-MTX Cell Model
February 23, 2023 (v1)
Subject: Biosystems
Keywords: adherence, Caco-2, HT29-MTX, human milk oligosaccharides, prebiotics, probiotics
The ability of bacteria to adhere to the intestinal mucosa is a critical property necessary for the long-term colonization of the intestinal tract. This ability can be highly sensitive to the presence of prebiotics. However, limited data are available in this respect for beneficial bacteria such as probiotics or resident gut microbiota. We previously demonstrated that the presence of prebiotics may decrease adherence in several pre- and probiotic combinations. Thus, characterizing the interactions between numerous combinations involving different classes of pre- and probiotics can be crucial in identifying new synbiotics. Accordingly, here, we extend our prior analyses to evaluate the adhesion of five lactobacilli, six bifidobacteria, and one probiotic Escherichia coli strains, as commercial probiotics or promising probiotic candidates, together with the cariogenic Bifidobacterium dentium strain. As an in vitro intestinal mucosa model, Caco-2 and mucin-secreting HT29-MTX cells were co-... [more]
456. LAPSE:2023.5963
Propylene Glycol Improves Stability of the Anti-Inflammatory Compounds in Scutellaria baicalensis Extract
February 23, 2023 (v1)
Subject: Biosystems
Keywords: anti-inflammation, propylene glycol, Scutellaria baicalensis, storage solvent
root extracts have been useful for external skin care and have been commercialized for years. Here, a comprehensive study was conducted to investigate the difference between 20% propylene glycol (PG) and water used as the storage solvent for a time course analysis of their remaining biological activities and ingredient compositions versus their freshly prepared conditions. Of the four major components in the 20% PG solvent, more than 80% of the components were retained after storage for two months, but in water only baicalin and wogonin were retained. The relative antibacterial activities, antioxidant properties and anti-inflammatory activities of the 20% PG solvent group were better than those of the water solvent group. Taken together, we demonstrated that these activities improved when PG, a common solvent used in many product formulas, was used as the storage solvent for the S. baicalensis extract.
457. LAPSE:2023.5958
Copperpod Plant Synthesized AgNPs Enhance Cytotoxic and Apoptotic Effect in Cancer Cell Lines
February 23, 2023 (v1)
Subject: Biosystems
Keywords: AgNPs, Copperpod plant, cytotoxic effect, DNA fragmentation, TEM
The utilization of biological resources on the manufacture of nano silver has attracted the interest of researchers to develop an eco-friendly, cost-effective technology in nanomaterials production. In the present study, plant-mediated silver nanoparticles (AgNPs) were synthesized using aqueous leaf extracts of the Copperpod plant, which was well characterized. The ultraviolet-visible spectrophotometric study showed a maximum absorbance peak at 425 nm, and the observation of transmission electron microscopic features revealed that the nanoparticles size ranged between 20 and 70 nm. The synthesized AgNPs were tested for in vitro cytotoxic effects against cancerous cells, such as HepG2, A549 and MCF-7 cells. The findings showed that the IC50 values of AgNPs against cancerous cells viz., HepG2, MCF-7 and A549 cells, were observed to be 69 µg/mL, 62 µg/mL and 53 µg/mL, respectively. In addition, the apoptosis property was analysed using propidium iodide and acridine orange-ethidium bromide... [more]
458. LAPSE:2023.5945
Protein L—More Than Just an Affinity Ligand
February 23, 2023 (v1)
Subject: Biosystems
Keywords: affinity ligands, antibody fragments, monoclonal antibodies, process analytical technology, protein A, protein G, protein L
In the past 30 years, highly specific drugs, known as antibodies, have conquered the biopharmaceutical market. In addition to monoclonal antibodies (mAbs), antibody fragments are successfully applied. However, recombinant production faces challenges. Process analytical tools for monitoring and controlling production processes are scarce and time-intensive. In the downstream process (DSP), affinity ligands are established as the primary and most important step, while the application of other methods is challenging. The use of these affinity ligands as monitoring tools would enable a platform technology to monitor process steps in the USP and DSP. In this review, we highlight the current applications of affinity ligands (proteins A, G, and L) and discuss further applications as process analytical tools.
459. LAPSE:2023.5940
Protective Effects of p-Coumaric Acid Isolated from Vaccinium bracteatum Thunb. Leaf Extract on Corticosterone-Induced Neurotoxicity in SH-SY5Y Cells and Primary Rat Cortical Neurons
February 23, 2023 (v1)
Subject: Biosystems
Keywords: corticosterone, p-coumaric acid, primary cell culture, SH-SY5Y cells, Vaccinium bracteatum Thunb. leaves
Corticosterone (CORT)-induced oxidative stress and neurotoxicity can cause neuronal dysfunction and mental disorders. In the present study, we investigated the effects and mechanism of the HP-20 resin fraction of the water extract of Vaccinium bracteatum leaves (NET-D1602) and its bioactive compound p-coumaric acid on neuronal cell damage in SH-SY5Y cells and primary culture of rat cortical cells. NET-D1602 and p-coumaric acid significantly improved cell viability in CORT-induced neurotoxicity in SH-SY5Y cells and primary cultures of rat cortical cells, and increased the activities of antioxidant enzymes (superoxide dismutase and catalase) against CORT-induced neurotoxicity in SH-SY5Y cells. NET-D1602 and p-coumaric acid increased the phosphorylation levels of ERK1/2 and cAMP response element-binding protein (CREB) in cortical neurons. In addition, CREB phosphorylation by NET-D1602 and p-coumaric acid was dramatically reversed by PKA, c-Raf/ERK, PI3K, and mTOR inhibitors. Lastly, we de... [more]
460. LAPSE:2023.5926
Expression of Secreted Neutrophil Gelatinase-Associated Lipocalin in 293T Cell Using the Inducible Dual-Function System
February 23, 2023 (v1)
Subject: Biosystems
Keywords: doxycycline, human serum albumin signal peptide, inducible vector, NGAL, Tet-On system
Neutrophil gelatinase-associated lipocalin (NGAL) has emerged as a promising biomarker for the early prediction of acute kidney injury (AKI). The production of recombinant NGAL is considered to be necessary for the development of a detection method. This study intended to express the recombinant NGAL protein in 293T cell under the Tet-On inducible system and human serum albumin signal sequence (HSA-SS). The transfection efficiency and protein modulation were assessed by detecting the expression of the enhanced green fluorescent protein (EGFP) and secreted NGAL protein. Both proteins were detected only in the presence of a doxycycline (Dox) inducer. Cell toxicity was not found under any conditions. Moreover, a higher level of soluble NGAL protein in the supernatant secreted by HSA-SS compared with a native signal peptide (Nat-SS) was observed. In summary, this work successfully optimized the conditions for induction of NGAL expression. This system will provide as an efficient strategy t... [more]
461. LAPSE:2023.5897
Polyphenolic Profiling of Green Waste Determined by UPLC-HDMSE
February 23, 2023 (v1)
Subject: Biosystems
Keywords: phenol-explorer database, phenolomics, polyphenols, Synapt G2-Si, TWIMS, UPLC-MS-MS
Valorising green waste will greatly enhance and promote the sustainable management of this large volume resource. One potential way to achieve this is the extraction of high value human health promoting chemicals (e.g., polyphenols) from this material. Our primary aim was to identify the main polyphenols present in four contrasting green waste feedstocks, namely Smyrnium olusatrum, Urtica dioica, Allium ursinum and Ulex europaeus, using UPLC-HDMSE. Polyphenol-rich Camellia sinensis (green tea) was used as a reference material. Samples were extracted and analysed by UPLC-HDMSE, which was followed by data processing using Progenesis QI and EZ Info. A total of 77 high scoring polyphenolic compounds with reported benefits to human health were tentatively identified in the samples, with abundances varying across the plant types; A. ursinum was seen to be the least abundant in respect to the polyphenols identified, whereas U. europaeus was the most abundant. Important components with a diver... [more]
462. LAPSE:2023.5892
Regulatory MicroRNAs in T2DM and Breast Cancer
February 23, 2023 (v1)
Subject: Biosystems
Keywords: breast cancer, diabetes–breast cancer association, microRNA, miRNA, T2DM
MicroRNAs orchestrate the tight regulation of numerous cellular processes and the deregulation in their activities has been implicated in many diseases, including diabetes and cancer. There is an increasing amount of epidemiological evidence associating diabetes, particularly type 2 diabetes mellitus, to an elevated risk of various cancer types, including breast cancer. However, little is yet known about the underlying molecular mechanisms and even less about the role miRNAs play in driving the tumorigenic potential of the cell signaling underlying diabetes pathogenesis. This article reviews the role of miRNA in bridging the diabetes−breast cancer association by discussing specific miRNAs that are implicated in diabetes and breast cancer and highlighting the overlap between the disease-specific regulatory miRNA networks to identify a 20-miRNA signature that is common to both diseases. Potential therapeutic targeting of these molecular players may help to alleviate the socioeconomic bur... [more]
463. LAPSE:2023.5890
New Perspectives of CYP1B1 Inhibitors in the Light of Molecular Studies
February 23, 2023 (v1)
Subject: Biosystems
Keywords: cancer chemoprevention and therapy, CYP1B1 inhibitors, cytochrome P450 1B1, molecular docking, molecular dynamics simulations
Human cytochrome P450 1B1 (CYP1B1) is an extrahepatic heme-containing monooxygenase. CYP1B1 contributes to the oxidative metabolism of xenobiotics, drugs, and endogenous substrates like melatonin, fatty acids, steroid hormones, and retinoids, which are involved in diverse critical cellular functions. CYP1B1 plays an important role in the pathogenesis of cardiovascular diseases, hormone-related cancers and is responsible for anti-cancer drug resistance. Inhibition of CYP1B1 activity is considered as an approach in cancer chemoprevention and cancer chemotherapy. CYP1B1 can activate anti-cancer prodrugs in tumor cells which display overexpression of CYP1B1 in comparison to normal cells. CYP1B1 involvement in carcinogenesis and cancer progression encourages investigation of CYP1B1 interactions with its ligands: substrates and inhibitors. Computational methods, with a simulation of molecular dynamics (MD), allow the observation of molecular interactions at the binding site of CYP1B1, which... [more]
464. LAPSE:2023.5866
Comprehensive Analysis of Mutation-Based and Expressed Genes-Based Pathways in Head and Neck Squamous Cell Carcinoma
February 23, 2023 (v1)
Subject: Biosystems
Keywords: CBSJukebox, head and neck squamous cell carcinoma (HNSCC), pathway analysis, precision medicine
Over- or under-expression of mRNA results from genetic alterations. Comprehensive pathway analyses based on mRNA expression are as important as single gene level mutations. This study aimed to compare the mutation- and mRNA expression-based signaling pathways in head and neck squamous cell carcinoma (HNSCC) and to match these with potential drug or druggable pathways. Altogether, 93 recurrent/metastatic HNSCC patients were enrolled. We performed targeted gene sequencing using Illumina HiSeq-2500 for NGS, and nanostring nCounter® for mRNA expression; mRNA expression was classified into over- or under-expression groups based on the expression. We investigated mutational and nanostring data using the CBSJukebox® system, which is a big-data driven platform to analyze druggable pathways, genes, and protein-protein interaction. We calculated a Treatment Benefit Prediction Score (TBPS) to identify suitable drugs. By mapping the high score interaction genes to identify druggable pathways, we f... [more]
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