LAPSE:2018.0255
Published Article
LAPSE:2018.0255
Optimal Experimental Design for Parameter Estimation of an IL-6 Signaling Model
Andrew Sinkoe, Juergen Hahn
July 31, 2018
IL-6 signaling plays an important role in inflammatory processes in the body. While a number of models for IL-6 signaling are available, the parameters associated with these models vary from case to case as they are non-trivial to determine. In this study, optimal experimental design is utilized to reduce the parameter uncertainty of an IL-6 signaling model consisting of ordinary differential equations, thereby increasing the accuracy of the estimated parameter values and, potentially, the model itself. The D-optimality criterion, operating on the Fisher information matrix and, separately, on a sensitivity matrix computed from the Morris method, was used as the objective function for the optimal experimental design problem. Optimal input functions for model parameter estimation were identified by solving the optimal experimental design problem, and the resulting input functions were shown to significantly decrease parameter uncertainty in simulated experiments. Interestingly, the determined optimal input functions took on the shape of PRBS signals even though there were no restrictions on their nature. Future work should corroborate these findings by applying the determined optimal experimental design on a real experiment.
Keywords
D-optimality criterion, Fisher information matrix, IL-6 signaling, optimal experimental design, parameter estimation, piecewise constant functions, sensitivity analysis
Suggested Citation
Sinkoe A, Hahn J. Optimal Experimental Design for Parameter Estimation of an IL-6 Signaling Model. (2018). LAPSE:2018.0255
Author Affiliations
Sinkoe A: Department of Biomedical Engineering, Rensselaer Polytechnic Institute, Troy, NY 12180, USA; Center for Biotechnology and Interdisciplinary Studies, Rensselaer Polytechnic Institute, Troy, NY 12180, USA
Hahn J: Department of Biomedical Engineering, Rensselaer Polytechnic Institute, Troy, NY 12180, USA; Center for Biotechnology and Interdisciplinary Studies, Rensselaer Polytechnic Institute, Troy, NY 12180, USA; Department of Chemical & Biological Engineering, Re [ORCID]
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Journal Name
Processes
Volume
5
Issue
3
Article Number
E49
Year
2017
Publication Date
2017-09-01
Published Version
ISSN
2227-9717
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PII: pr5030049, Publication Type: Journal Article
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LAPSE:2018.0255
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doi:10.3390/pr5030049
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Jul 31, 2018
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