LAPSE:2025.0433v1
Published Article

LAPSE:2025.0433v1
A Physics-Informed Approach to Dynamic Modeling and Parameter Estimation in Biotechnology
June 27, 2025
Abstract
The increasing complexity of industrial biotechnology demands advanced modeling techniques capable of capturing the intricate dynamics of bioreactors. Traditional regression-based and empirical methods often fall short when confronted with the highly nonlinear behavior and limited experimental data characteristic of bioprocesses. Addressing these challenges requires a more intelligent approachone that leverages domain knowledge to model complex bioprocess dynamics effectively, even with sparse data, while maintaining interpretability and robustness. In this study, we introduce a process-informed, data-driven methodology for modeling the dynamics of industrial bioreactors, leveraging the capabilities of the rising field of Scientific Machine Learning (SciML). Our approach leverages Physics-Informed Neural Networks (PINNs) to seamlessly integrate domain knowledge encoded in physical laws with sparse experimental data and deep learning techniques, enabling precise simulation and modeling of bioreactor operations. The framework is validated using real-world experimental data, demonstrating its capability for state and space estimation, essential for optimizing biomanufacturing processes. Our findings underscore the potential of Physics Informed Neural Networks to address the challenges of dynamic modeling in bioprocesses, paving the way for the development of intelligent, autonomous, and data-driven solutions in industrial biotechnology. This fusion of data-driven and mechanistic modeling represents a transformative step toward enhancing the efficiency, scalability, and sustainability of modern biomanufacturing practices.
The increasing complexity of industrial biotechnology demands advanced modeling techniques capable of capturing the intricate dynamics of bioreactors. Traditional regression-based and empirical methods often fall short when confronted with the highly nonlinear behavior and limited experimental data characteristic of bioprocesses. Addressing these challenges requires a more intelligent approachone that leverages domain knowledge to model complex bioprocess dynamics effectively, even with sparse data, while maintaining interpretability and robustness. In this study, we introduce a process-informed, data-driven methodology for modeling the dynamics of industrial bioreactors, leveraging the capabilities of the rising field of Scientific Machine Learning (SciML). Our approach leverages Physics-Informed Neural Networks (PINNs) to seamlessly integrate domain knowledge encoded in physical laws with sparse experimental data and deep learning techniques, enabling precise simulation and modeling of bioreactor operations. The framework is validated using real-world experimental data, demonstrating its capability for state and space estimation, essential for optimizing biomanufacturing processes. Our findings underscore the potential of Physics Informed Neural Networks to address the challenges of dynamic modeling in bioprocesses, paving the way for the development of intelligent, autonomous, and data-driven solutions in industrial biotechnology. This fusion of data-driven and mechanistic modeling represents a transformative step toward enhancing the efficiency, scalability, and sustainability of modern biomanufacturing practices.
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Mexis K, Xenios S, Trokanas N, Kokossis A. A Physics-Informed Approach to Dynamic Modeling and Parameter Estimation in Biotechnology. Systems and Control Transactions 4:1750-1755 (2025) https://doi.org/10.69997/sct.122347
Author Affiliations
Mexis K: National Technical University of Athens, Department of Chemical Engineering, Athens, Greece
Xenios S: National Technical University of Athens, Department of Chemical Engineering, Athens, Greece
Trokanas N: National Technical University of Athens, Department of Chemical Engineering, Athens, Greece
Kokossis A: National Technical University of Athens, Department of Chemical Engineering, Athens, Greece
Xenios S: National Technical University of Athens, Department of Chemical Engineering, Athens, Greece
Trokanas N: National Technical University of Athens, Department of Chemical Engineering, Athens, Greece
Kokossis A: National Technical University of Athens, Department of Chemical Engineering, Athens, Greece
Journal Name
Systems and Control Transactions
Volume
4
First Page
1750
Last Page
1755
Year
2025
Publication Date
2025-07-01
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Original Submission
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PII: 1750-1755-1312-SCT-4-2025, Publication Type: Journal Article
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LAPSE:2025.0433v1
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https://doi.org/10.69997/sct.122347
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Jun 27, 2025
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References Cited
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