LAPSE:2023.5494
Published Article
LAPSE:2023.5494
Digital Twin Application for Model-Based DoE to Rapidly Identify Ideal Process Conditions for Space-Time Yield Optimization
Benjamin Bayer, Roger Dalmau Diaz, Michael Melcher, Gerald Striedner, Mark Duerkop
February 23, 2023
Abstract
The fast exploration of a design space and identification of the best process conditions facilitating the highest space-time yield are of great interest for manufacturers. To obtain this information, depending on the design space, a large number of practical experiments must be performed, analyzed, and evaluated. To reduce this experimental effort and increase the process understanding, we evaluated a model-based design of experiments to rapidly identify the optimum process conditions in a design space maximizing space-time yield. From a small initial dataset, hybrid models were implemented and used as digital bioprocess twins, thus obtaining the recommended optimal experiment. In cases where these optimum conditions were not covered by existing data, the experiment was carried out and added to the initial data set, re-training the hybrid model. The procedure was repeated until the model gained certainty about the best process conditions, i.e., no new recommendations. To evaluate this workflow, we utilized different initial data sets and assessed their respective performances. The fastest approach for optimizing the space-time yield in a three-dimensional design space was found with five initial experiments. The digital twin gained certainty after four recommendations, leading to a significantly reduced experimental effort compared to other state-of-the-art approaches. This highlights the benefits of in silico design space exploration for accelerating knowledge-based bioprocess development, and reducing the number of hands-on experiments, time, energy, and raw materials.
Keywords
Escherichia coli, hybrid modeling, Machine Learning, model-assisted DoE, quality by design, upstream bioprocessing
Suggested Citation
Bayer B, Dalmau Diaz R, Melcher M, Striedner G, Duerkop M. Digital Twin Application for Model-Based DoE to Rapidly Identify Ideal Process Conditions for Space-Time Yield Optimization. (2023). LAPSE:2023.5494
Author Affiliations
Bayer B: Department of Biotechnology, University of Natural Resources and Life Sciences, 1190 Vienna, Austria; Novasign GmbH, 1190 Vienna, Austria [ORCID]
Dalmau Diaz R: Department of Biotechnology, University of Natural Resources and Life Sciences, 1190 Vienna, Austria; Novasign GmbH, 1190 Vienna, Austria
Melcher M: Department of Biotechnology, University of Natural Resources and Life Sciences, 1190 Vienna, Austria
Striedner G: Department of Biotechnology, University of Natural Resources and Life Sciences, 1190 Vienna, Austria; Novasign GmbH, 1190 Vienna, Austria [ORCID]
Duerkop M: Department of Biotechnology, University of Natural Resources and Life Sciences, 1190 Vienna, Austria; Novasign GmbH, 1190 Vienna, Austria
Journal Name
Processes
Volume
9
Issue
7
First Page
1109
Year
2021
Publication Date
2021-06-25
ISSN
2227-9717
Version Comments
Original Submission
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PII: pr9071109, Publication Type: Journal Article
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LAPSE:2023.5494
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https://doi.org/10.3390/pr9071109
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Feb 23, 2023
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