Sensor nodes have been assigned a lot of tasks in a connected environment that is growing rapidly. The power supply remains a challenge that is not answered convincingly. Energy harvesting is an emerging solution that is being studied to integrate in low power applications such as internet of things (IoT) and wireless sensor networks (WSN). In this work an interface circuit for a novel fluttering wind energy harvester is presented. The system consists of a switching converter controlled by a low power microcontroller. Optimization techniques on the hardware and software level have been implemented, and a prototype is developed for testing. Experiments have been done with generated input signals resulting in up to 67% efficiency for a constant voltage input. Other experiments were conducted in a wind tunnel that showed a transient output that is compatible with the target applications.