The biodegradation of phenol, sodium salicylate (SA), and 4-chlorophenol (4-CP) by Pseudomonas putida (P. putida) was evaluated by batch and chemostat experiments in single and binary substrate systems. The Haldane kinetics model for cell growth was chosen to describe the batch kinetic behavior to determine kinetic parameters in the single or binary substrates system. In the single phenol and SA system, the kinetic constants of μm,P = 0.423 h−1, μm,A = 0.247 h−1, KS,P = 48.1 mg/L, KS,A = 71.7 mg/L, KI,P = 272.5 mg/L, and KI,A = 3178.2 mg/L were evaluated. Experimental results indicate that SA was degraded more rapidly by P. putida cells compared to phenol because SA has a much larger KI value than phenol, which makes the cells less sensitive to substrate inhibition even though the μ value is larger compared to μm,A. The ratio of inhibition of phenol degradation due to the presence of SA (IA) to the inhibition of SA degradation due to the presence of phenol (IA) is 2.3, indicating that SA has a higher uncompetitive inhibition on phenol biodegradation compared to that of phenol on SA biodegradation in the binary substrate system. In the ternary substrate system, the time required for the complete degradation of SA and phenol was 14 and 11.5 d and an approximately 90% removal efficiency for 4-CP was achieved within 14 d. In the chemostat system, the removal rates of phenol and SA were 96.6 and 97.0%, while those of SA and 4-CP were 91.4% and 95.2%, respectively. The model prediction agreed satisfactorily with the experimental results of the chemostat system.