The in situ determination of metals in plants used for phytoremediation is still a challenge that must be overcome to control the plant stress over time due to metals uptake as well as to quantify the concentration of these metals in the biomass for further potential applications. In this exploratory study, we acquired hyperspectral images in the visible/near infrared regions of dried and ground stems and roots of Jatropha curcas L. to which different amounts of copper (Cu) were added. The spectral information was extracted from the images to build classification models based on the concentration of Cu. Optimum wavelengths were selected from the peaks and valleys showed in the loadings plots resulting from principal component analysis, thus reducing the number of spectral variables. Linear discriminant analysis was subsequently performed using these optimum wavelengths. It was possible to differentiate samples without addition of copper from samples with low (0.5−1% wt.) and high (5% wt.) amounts of copper (83.93% accuracy, >0.70 sensitivity and specificity). This technique could be used after enhancing prediction models with a higher amount of samples and after determining the potential interference of other compounds present in plants.