The integration and control of energy systems for power generation consists of multiple heterogeneous subsystems, such as chemical, electrochemical, and thermal, and contains challenges that arise from the multi-way interactions due to complex dynamic responses among the involved subsystems. The main motivation of this work is to design the control system for an autonomous automated and sustainable system that meets a certain power demand profile. A systematic methodology for the integration and control of a hybrid system that converts liquefied petroleum gas (LPG) to hydrogen, which is subsequently used to generate electrical power in a high-temperature fuel cell that charges a Li-Ion battery unit, is presented. An advanced nonlinear model predictive control (NMPC) framework is implemented to achieve this goal. The operational objective is the satisfaction of power demand while maintaining operation within a safe region and ensuring thermal and chemical balance. The proposed NMPC framework based on experimentally validated models is evaluated through simulation for realistic operation scenarios that involve static and dynamic variations of the power load.