An integrated geological and geophysical approach is presented for the recognition of unconventional targets in the Miocene formations of the Carpathian Foredeep, southern Poland. The subject of the analysis is an unconventional reservoir built of interlayered packets of sandstone, mudstone and claystone, called a “heterogeneous sequence”. This type of sequence acts as both a reservoir and as source rock for hydrocarbons and it consists of layers of insignificant thickness, below the resolution of seismic data. The interpretation of such a sequence has rarely been based on seismic stratigraphy analysis; however, such an approach is proposed here. The subject of interpretation is high-quality seismic data of high resolution that enable detailed depositional analysis. The reconstruction of the depositional history was possible due to the analysis of flattened chronostratigraphic horizons (Wheeler diagram). The identification of depositional positions in a sedimentary basin was the first step for the indication of potential target areas. These areas were also subject to seismic attribute analysis (sweetness) and spectral decomposition. The seismic attribute results positively verified the previously proposed prospects. The results obtained demonstrate that the interpretation of the Miocene sediments in the Carpathian Foredeep should take into account the depositional history reconstruction and paleogeographical analysis.