LAPSE:2023.11375
Published Article
LAPSE:2023.11375
In Silico Prediction, Characterization and Molecular Docking Studies on New Benzamide Derivatives
Roxana Roman, Lucia Pintilie, Diana Nuță, Speranța Avram, Catalin Buiu, Catalina Sogor, Carmen Limban
February 27, 2023
Abstract
Recent research papers have confirmed the prevalence of microorganisms resistant to numerous antimicrobial agents, leading to spreading infections, extended hospitalizations, and increased mortality rates. The amplifying factors stimulate the need to discover new molecules able to cut off the developing resistance of pathogens against medicines. The current study presents a molecular docking procedure applied on 15 new pyridine−thiourea derivatives in order to test their activities against S. aureus and E. coli. The protein crystal structures were obtained from the Protein Data Bank (PDB). Processes such as geometry optimization, molecular properties (log P, polarizability, E HOMO, E LUMO, area and volume of the molecules, and ovality), drug-likeness, pharmacokinetic and pharmacogenomic profiles, and molecular docking studies are discussed in the present research. The approach involved the determination of the molecular properties for each chemical structure by using the Spartan 14 software, followed by the evaluation of their binding affinity through a specific docking score with the aid of the CLC Drug Discovery Workbench. Each studied compound established hydrogen bonds with the selected receptors, leading to suitable docking scores and increasing the chances of the compound being considered for further investigation.
Keywords
benzamide, molecular docking studies, pyridine, QSAR, thiourea
Subject
Suggested Citation
Roman R, Pintilie L, Nuță D, Avram S, Buiu C, Sogor C, Limban C. In Silico Prediction, Characterization and Molecular Docking Studies on New Benzamide Derivatives. (2023). LAPSE:2023.11375
Author Affiliations
Roman R: Department of Pharmaceutical Chemistry, Faculty of Pharmacy, “Carol Davila” University of Medicine and Pharmacy, Traian Vuia no.6, 020956 Bucharest, Romania
Pintilie L: National Institute of Chemical-Pharmaceutical Research & Development, Vitan Av. 112, 031299 Bucharest, Romania [ORCID]
Nuță D: Department of Pharmaceutical Chemistry, Faculty of Pharmacy, “Carol Davila” University of Medicine and Pharmacy, Traian Vuia no.6, 020956 Bucharest, Romania [ORCID]
Avram S: Department of Anatomy, Animal Physiology and Biophysics, Faculty of Biology, University of Bucharest, 91−95 Splaiul Independentei, 050095 Bucharest, Romania
Buiu C: Department of Automatic Control and Systems Engineering, Politehnica University of Bucharest, 313 Splaiul Independentei, 060042 Bucharest, Romania [ORCID]
Sogor C: Department of Anatomy, Animal Physiology and Biophysics, Faculty of Biology, University of Bucharest, 91−95 Splaiul Independentei, 050095 Bucharest, Romania [ORCID]
Limban C: Department of Pharmaceutical Chemistry, Faculty of Pharmacy, “Carol Davila” University of Medicine and Pharmacy, Traian Vuia no.6, 020956 Bucharest, Romania
Journal Name
Processes
Volume
11
Issue
2
First Page
479
Year
2023
Publication Date
2023-02-05
ISSN
2227-9717
Version Comments
Original Submission
Other Meta
PII: pr11020479, Publication Type: Journal Article
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LAPSE:2023.11375
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https://doi.org/10.3390/pr11020479
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