In regard to the rapid development of renewable energy sources, more and more photovoltaic (PV) generation systems have been connected to main power networks, and it is critical to enhance their transient performance under short-circuit faults conditions. This paper proposes and studies the coordinated control of a flux-coupling-type superconducting fault current limiter (SFCL) and a superconducting magnetic energy storage (SMES), to improve the fault ride through (FRT) capability and smooth the power fluctuation of a grid-connected PV generation system. Theoretical analyses of the device structure, operating principle and control strategy are conducted, and a detailed simulation model of 100 kW class PV generation system is built in MATLAB/SIMULINK. During the simulations of the symmetrical and asymmetrical faults, the maximum power point tracking (MPPT) control is disabled, and four different cases including without auxiliary, with SFCL, with SMES, and with SFCL-SMES, are compared. From the demonstrated results, the combination of without MPPT and with SFCL-SMES can more efficiently improve the point of common coupling (PCC) voltage sag, inhibit the DC-link overvoltage and alleviate the power fluctuation. Finally, a preliminary parameter optimization method is suggested for the SFCL and the SMES, and it is helpful to promote their future application in the real PV projects.