LAPSE:2025.0422
Published Article

LAPSE:2025.0422
Hybrid machine-learning for dynamic plant-wide biomanufacturing
June 27, 2025
Abstract
This study focuses on biomanufacturing case study, i.e. Lovastatin production, employing a hybrid modeling framework that combines mechanistic and data-driven approaches. A time-series dataset was generated using the KT-Biologics I (KTB1) plantwide model, a dynamic simulation of continuous biomanufacturing. The dataset captures critical parameters such as nutrient concentrations and API production. The AI-DARWIN framework was used to develop interpretable machine learning models with constrained functional forms, ensuring both accuracy and clarity. The resulting polynomial-based models reveal key relationships between process variables and system performance, bridging mechanistic insights with data-driven predictions. The models demonstrated reasonable accuracy showing minimal difference between the training and testing errors, highlighting their strong generalization. This work advances hybrid modeling in biomanufacturing by integrating plant-wide mechanistic simulations with interpretable machine learning. The approach ensures both accuracy and transparency while enabling robust process monitoring and control at a plant-wide level, contributing to the broader adoption of hybrid modeling in biomanufacturing.
This study focuses on biomanufacturing case study, i.e. Lovastatin production, employing a hybrid modeling framework that combines mechanistic and data-driven approaches. A time-series dataset was generated using the KT-Biologics I (KTB1) plantwide model, a dynamic simulation of continuous biomanufacturing. The dataset captures critical parameters such as nutrient concentrations and API production. The AI-DARWIN framework was used to develop interpretable machine learning models with constrained functional forms, ensuring both accuracy and clarity. The resulting polynomial-based models reveal key relationships between process variables and system performance, bridging mechanistic insights with data-driven predictions. The models demonstrated reasonable accuracy showing minimal difference between the training and testing errors, highlighting their strong generalization. This work advances hybrid modeling in biomanufacturing by integrating plant-wide mechanistic simulations with interpretable machine learning. The approach ensures both accuracy and transparency while enabling robust process monitoring and control at a plant-wide level, contributing to the broader adoption of hybrid modeling in biomanufacturing.
Record ID
Keywords
Biomanufacturing, Hybrid modeling, Interpretable machine learning, Lovastatin production, Plant-wide modeling
Subject
Suggested Citation
Shahhoseyni S, Chakraborty A, Boskabadi MR, Venkatasubramanian V, Mansouri SS. Hybrid machine-learning for dynamic plant-wide biomanufacturing. Systems and Control Transactions 4:1682-1687 (2025) https://doi.org/10.69997/sct.174465
Author Affiliations
Shahhoseyni S: Department of Chemical and Biochemical Engineering, Technical University of Denmark, DK-2800 Kgs Lyngby, Denmark
Chakraborty A: Department of Chemical Engineering, Columbia University, New York, NY 10027, United States of America
Boskabadi MR: Department of Chemical and Biochemical Engineering, Technical University of Denmark, DK-2800 Kgs Lyngby, Denmark
Venkatasubramanian V: Department of Chemical Engineering, Columbia University, New York, NY 10027, United States of America
Mansouri SS: Department of Chemical and Biochemical Engineering, Technical University of Denmark, DK-2800 Kgs Lyngby, Denmark
Chakraborty A: Department of Chemical Engineering, Columbia University, New York, NY 10027, United States of America
Boskabadi MR: Department of Chemical and Biochemical Engineering, Technical University of Denmark, DK-2800 Kgs Lyngby, Denmark
Venkatasubramanian V: Department of Chemical Engineering, Columbia University, New York, NY 10027, United States of America
Mansouri SS: Department of Chemical and Biochemical Engineering, Technical University of Denmark, DK-2800 Kgs Lyngby, Denmark
Journal Name
Systems and Control Transactions
Volume
4
First Page
1682
Last Page
1687
Year
2025
Publication Date
2025-07-01
Version Comments
Original Submission
Other Meta
PII: 1682-1687-1213-SCT-4-2025, Publication Type: Journal Article
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LAPSE:2025.0422
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https://doi.org/10.69997/sct.174465
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Jun 27, 2025
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Links to Related Works
References Cited
- Boskabadi, M., Ramin, P., Kager, J., Sin, G., & Mansouri, S. S. (2024). KT-Biologics I (KTB1): A dynamic simulation model for continuous biologics manufacturing. Computers and Chemical Engineering, 108770 https://doi.org/10.1016/j.compchemeng.2024.108770
- Venkatasubramanian, V. (2009). Drowning in data: Informatics and modeling challenges in a data-rich, networked world. AIChE Journal, 55(1), 2-8 https://doi.org/10.1002/aic.11756
- Shahhoseyni, S., Greco, L., Sivaram, A., & Mansouri, S. S. (2024). A reduced-order hybrid model for photobioreactor performance and biomass prediction. Algal Research, 84, 103750 https://doi.org/10.1016/j.algal.2024.103750
- Chakraborty, A., Serneels, S., Claussen, H., & Venkatasubramanian, V. (2022). Hybrid AI models in chemical engineering - A purpose-driven perspective. Computer Aided Chemical Engineering, 51, 1507-1512. Elsevier https://doi.org/10.1016/B978-0-323-95879-0.50252-6
- Chakraborty, A., Sivaram, A., & Venkatasubramanian, V. (2021). AI-DARWIN: A first principles-based model discovery engine using machine learning. Computers & Chemical Engineering, 154, 107470 https://doi.org/10.1016/j.compchemeng.2021.107470
- Wentz, J., & Doostan, A. (2023). Derivative-based SINDy (DSINDy): Addressing the challenge of discovering governing equations from noisy data. Computer Methods in Applied Mechanics and Engineering, 413, 116096 https://doi.org/10.1016/j.cma.2023.116096
- Venkatasubramanian, V., & Chakraborty, A. (2025). Quo Vadis ChatGPT? From large language models to large knowledge models. Computers & Chemical Engineering, 192, 108895 https://doi.org/10.1016/j.compchemeng.2024.108895
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