Proceedings of ESCAPE 35ISSN: 2818-4734
Volume: 4 (2025)
Table of Contents
LAPSE:2025.0310
Published Article
LAPSE:2025.0310
Learning-based Control Approach for Nanobody-scorpion Antivenom Optimization
Juan Camilo Acosta-Pavas, David Camilo Corrales, Susana María Alonso Villela, Balkiss Bouhaouala-Zahar, Georgios Georgakilas, Konstantinos Mexis, Stefanos Xenios, Theodore Dalamagas, Antonis Kokossis, Michael O'donohue, Luc Fillaudeau, César Arturo Aceves-Lara
June 27, 2025
Abstract
One market scope of bioindustries is the production of recombinant proteins for its application in serotherapy. However, its process's monitoring and optimization present limitations. There are different approaches to optimize bioprocess performance; one is using model-based control strategies such as Model Predictive Control (MPC). Another strategy is learning-based control, such as Reinforcement Learning (RL). In this work, an RL approach was applied to maximize the production of recombinant proteins in E. coli at the induction phase using as a control variable the substrate feed flow rate (Fin). The RL model was trained using the actor-critic Twin-Delayed Deep Deterministic (TD3) Policy Gradient agent. The reward corresponded to the maximum value of protein productivity. The environment was represented with a dynamic hybrid model. The optimization was evaluated by stages of two hours to check the protein productivity performance. Afterwards, the results were compared with an MPC approach. Finally, the control approaches were trained considering temperature disturbances. The results elucidate that the RL approach could be implemented as a control strategy, reaching values from 0.014 mg/h to 0.079 mg/h through all the optimization stages previously demonstrated to be the optimal ones. Despite exhibiting temperature disturbances, the RL approach demonstrated its robustness by adapting the control action to maintain similar protein productivity values.
Keywords
EColi, Model Predictive Control, Protein production, Reinforcement Learning, TD3
Suggested Citation
Acosta-Pavas JC, Corrales DC, Villela SMA, Bouhaouala-Zahar B, Georgakilas G, Mexis K, Xenios S, Dalamagas T, Kokossis A, O'donohue M, Fillaudeau L, Aceves-Lara CA. Learning-based Control Approach for Nanobody-scorpion Antivenom Optimization. Systems and Control Transactions 4:986-992 (2025) https://doi.org/10.69997/sct.149893
Author Affiliations
Acosta-Pavas JC: TBI, Université de Toulouse, CNRS UMR5504, INRAE UMR792, INSA, Toulouse, France
Corrales DC: TBI, Université de Toulouse, CNRS UMR5504, INRAE UMR792, INSA, Toulouse, France
Villela SMA: TBI, Université de Toulouse, CNRS UMR5504, INRAE UMR792, INSA, Toulouse, France
Bouhaouala-Zahar B: Laboratoire des Biomolécules, Venins et Applications Théranostiques (LBVAT), Institut Pasteur de Tunis, 13 Place Pasteur, BP-74, 1002 Le Belvédère, Tunis, Tunisia
Georgakilas G: Athena Research Center, Marousi, Greece
Mexis K: School of Chemical Engineering, National Technical University of Athens, Iroon Polytechneiou 9, Zografou, 15780 Athens, Greece
Xenios S: School of Chemical Engineering, National Technical University of Athens, Iroon Polytechneiou 9, Zografou, 15780 Athens, Greece
Dalamagas T: Athena Research Center, Marousi, Greece
Kokossis A: School of Chemical Engineering, National Technical University of Athens, Iroon Polytechneiou 9, Zografou, 15780 Athens, Greece
O'donohue M: TBI, Université de Toulouse, CNRS UMR5504, INRAE UMR792, INSA, Toulouse, France
Fillaudeau L: TBI, Université de Toulouse, CNRS UMR5504, INRAE UMR792, INSA, Toulouse, France
Aceves-Lara CA: TBI, Université de Toulouse, CNRS UMR5504, INRAE UMR792, INSA, Toulouse, France
Journal Name
Systems and Control Transactions
Volume
4
First Page
986
Last Page
992
Year
2025
Publication Date
2025-07-01
Version Comments
Original Submission
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PII: 0986-0992-1201-SCT-4-2025, Publication Type: Journal Article
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LAPSE:2025.0310
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