LAPSE:2023.11269
Published Article
LAPSE:2023.11269
Dataset of 3β-Corner and 3β-Corner-like Structures
Vladimir R. Rudnev, Liudmila I. Kulikova, Kirill S. Nikolsky, Denis V. Petrovsky, Alexander A. Stepanov, Kristina A. Malsagova, Anna L. Kaysheva
February 27, 2023
Abstract
The study is devoted to the creation of a dataset of protein structural motifs of the 3β-corner type. The relevance and importance of creating a dataset of 3β-corners is determined by the fact that this structure can be an embryo or a ready-made structural block in the process of protein folding, and can also act as an independent object of research in the field of structural biology. The dataset also contains 3β-corner-like structures that are geometrically similar to 3β-corners. The dataset consists of 45,896 structures. For each motif, its characteristics are presented: the name of the protein in which the 3β-corner is recognized, the method and resolution of the protein structure, the coordinates of localization in the protein, the secondary structure of the amino acid sequence, the gyration radius, the solvent-accessible area, and the composition of the elements of the secondary structure. The dataset will allow a comprehensive study of structures on a large scale and advance the understanding of the features and patterns of their structural organization.
Keywords
3β-corner, 3β-corner-like structure, dataset, structural motif of a protein
Subject
Suggested Citation
Rudnev VR, Kulikova LI, Nikolsky KS, Petrovsky DV, Stepanov AA, Malsagova KA, Kaysheva AL. Dataset of 3β-Corner and 3β-Corner-like Structures. (2023). LAPSE:2023.11269
Author Affiliations
Rudnev VR: Biobanking Group, Branch of Institute of Biomedical Chemistry “Scientific and Education Center”, 109028 Moscow, Russia
Kulikova LI: Biobanking Group, Branch of Institute of Biomedical Chemistry “Scientific and Education Center”, 109028 Moscow, Russia
Nikolsky KS: Biobanking Group, Branch of Institute of Biomedical Chemistry “Scientific and Education Center”, 109028 Moscow, Russia
Petrovsky DV: Biobanking Group, Branch of Institute of Biomedical Chemistry “Scientific and Education Center”, 109028 Moscow, Russia
Stepanov AA: Biobanking Group, Branch of Institute of Biomedical Chemistry “Scientific and Education Center”, 109028 Moscow, Russia [ORCID]
Malsagova KA: Biobanking Group, Branch of Institute of Biomedical Chemistry “Scientific and Education Center”, 109028 Moscow, Russia [ORCID]
Kaysheva AL: Biobanking Group, Branch of Institute of Biomedical Chemistry “Scientific and Education Center”, 109028 Moscow, Russia [ORCID]
Journal Name
Processes
Volume
11
Issue
2
First Page
368
Year
2023
Publication Date
2023-01-24
ISSN
2227-9717
Version Comments
Original Submission
Other Meta
PII: pr11020368, Publication Type: Journal Article
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LAPSE:2023.11269
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https://doi.org/10.3390/pr11020368
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Feb 27, 2023
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CC BY 4.0
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