Soil microbial community plays a major role in removal of polycyclic aromatic hydrocarbons (PAHs) from soil, and bioremediation potentially offers an attractive and economic approach to the clean-up of polluted areas. To evaluate the contribution of different microbial groups in soil PAH degradation, enzymatic activity and phospholipid fatty acids (PLFAs) were analysed in a mesocosm trial in three different soils (two natural and one industrial) artificially contaminated with 3- and 5-rings PAHs. The Metabolic Activity Index (MAI) was applied to investigate the microbial community stability, in terms of resistance and resilience. Gram+ and Gram- bacteria were the predominant microbial groups in all soil types. In the first stage of incubation, fungi were predominant in the industrial soil, followed by mycorrhizae and actinomycetes, indicating their stimulation after PAH addition. In the two natural soils, several groups were predominant: actinomycetes in one, fungi and mycorrhizae in the other, indicating a different response of the two natural soils to PAH contamination. Regarding MAI calculated on the enzymatic activities, one natural soil showed a microbial community neither resistant nor resilient in respect to the other and to the industrial soil. Our results highlight that the microbial community changes its composition and then physiological functions according to the land use as a result of PAH addition.