LAPSE:2022.0148
Software or Source Code
LAPSE:2022.0148
Source code for STORE model
November 15, 2022. Originally submitted on November 14, 2022
This is the source code for the STORE (STochasic Omentum REsponse) model. The model is used to simulate how naive T-cells in the omentum will prime and multiply during the expansion period (8 days) after a T-cell vaccination in a mouse.

This is the matlab source code used in the following paper:

Christian DA, Adams TA II, Smith TA, Shallberg LA, Theisen DJ, Phan AT, Abraha M, Perry J, Ruthel G, Clark JT, Murphy KM, Kedl, RM, Hunter CA. cDC1 coordinate innate and adaptive responses in the omentum required for T cell priming and memory. Science Immunology 7, eabq7432 (2022).

This is fixed legacy code used for the paper for scientific auditing and reproduction purposes. See paper for documentation.
Title in Alternate Language
Kildekode for STORE-modellen
Keywords
Computational Biology, Dynamic Modelling, Matlab, Omentum, Particle Swarm Optimization, Stochastic Modelling, Vaccine
Subject
Suggested Citation
Adams TA II. Source code for STORE model. (2022). LAPSE:2022.0148
Author Affiliations
Adams TA II: Norwegian University of Science and Technology [ORCID] [Google Scholar]
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Year
2020
Publication Date
2020-06-10
Version Comments
Added Scripts that Plot the Results
Other Meta
Code used for the manuscript: Christian DA, Adams TA II, Smith TA, Shallberg LA, Theisen DJ, Phan AT, Abraha M, Perry J, Ruthel G, Clark JT, Murphy KM, Kedl, RM, Hunter CA. cDC1 coordinate innate and adaptive responses in the omentum required for T cell priming and memory. Science Immunology 7, eabq7432 (2022).

https://doi.org/10.1126/sciimmunol.abq7432
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LAPSE:2022.0148
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doi:10.1126/sciimmunol.abq7432
Corresponding Scientific Publicatio...
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CC BY-NC-ND 4.0
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Version History
[v2] (Added Scripts that Plot the Results)
Nov 15, 2022
[v1] (Original Submission)
Nov 14, 2022
 
Verified by curator on
Nov 14, 2022
This Version Number
v2
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https://psecommunity.org/LAPSE:2022.0148
 
Original Submitter
Thomas A. Adams II
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Corresponding Scientific Publication