In this research, the application of heat pipes in the air handler dedicated to decoupling dehumidification from cooling to reduce energy consumption was simulated and investigated by simulations and experimental studies. The cooling load profiles and heat pipes with effectiveness of 0.45 and 0.6, respectively, were evaluated in achieving the desired space conditions and calculated hour by hour. The results demonstrated that for all examined cases, a heat pipe heat exchanger (HPHX) can be used to save over 80% of the energy during the hours of operation of air conditioning. The overall energy reduction rate was from 3.2% to 4.5% under air conditioning system conditions. It was found that the energy saving potential of a laboratory was higher than for other kinds of buildings. Therefore, the dedicated ventilation system combined with heat recovery technology can be efficiently applied to buildings, especially for laboratories in subtropical areas.